BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935388
Length=1025
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44510.1 | Symbols: | CDK inhibitor P21 binding protein | c... 1616 0.0
AT5G03830.1 | Symbols: | CDK inhibitor P21 binding protein | c... 477 9e-134
> AT2G44510.1 | Symbols: | CDK inhibitor P21 binding protein |
chr2:18377070-18379210 FORWARD LENGTH=1318
Length=1318
Score = 1616 bits (875), Expect = 0.0
Identities = 967/1011 (96%), Gaps = 7/1011 (1%)
Strand=Plus/Plus
Query 20 AGATGCCTCGAAGACCATCATCAGGAAGAAGAGTGTTAAAGTATCAGCCTTTAGCATTTT 79
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 156 AGATGCCTCGAAGACCATCATCAGGAAGAAGAGTGTTAAAGCATCAGCCTTTAACATTTT 215
Query 80 CACCGTTTATGCGGTTACTTTCCTTTGCTTCAATGGCTAGGCGTAATTTGCCTCATCCTG 139
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 216 CACCGTTTATGCGGTTACTTTCCTTTGCTTCAATGGCTAGGCGTGATTTGTCTCATCCTG 275
Query 140 AAGATTGTCAATGTTCTGATGAAGAGATATCTTTTGATGAAAAGGAAAAGATCCCTAATT 199
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 276 AAGATTGTCAATGTTCTGATGAAGATATATCTTTTGATGAAAAGCAAAAGATCCCTAATT 335
Query 200 TATCTAAG-AAAGGGAAAGAACAACAATTATCGGACTCGTCTGATGAAGAAGATTCTCAG 258
|| | ||| |||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct 336 TA-CCAAGAAAAGGGAAAGAAGAACAAGTCTCGGACTCGTCTGATGAAGAAGATTCTCAG 394
Query 259 GAAGATGTCCAAGCAGACTTTGAGTTCTTTGATCCTAAACCTACAGACTTTCATGGAGTC 318
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 395 GAAGATGTCCAAGCAGACTTTGAGTTCTTTGATCCTAAACCTACAGACTTTCATGGTGTT 454
Query 319 AAGATCCTGTTACAAAACTATCTCGATGACAAGGAGTGGGATTTGAGCAGTTTTGTTGAT 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 AAGATCCTGTTACAAAACTATCTCGATGACAAGGAGTGGGATTTGAGCAGTTTTGTTGAT 514
Query 379 TTCATATTGGAGCAAACAACTGTAGGAACTGTTGTAAAAGTTGCAGATGATGAGGACGAG 438
| ||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||
Sbjct 515 TGCATATTGGAGCAAACAACTGTAGGAACTGTTGTGAAAGTAGCTGATGATGAGGATGAG 574
Query 439 TCAGTATTTGCTCTTGTCACTGCTCTTAACATGGCAAGATATAAGGACAACAAGTGCTTT 498
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 575 TCAGTATTTGCTCTTGTCACTGCTCTTAACATGGCAAGAGATAAGGACAACAAGTGTTTT 634
Query 499 AGAGACTTAAAAGAGTTTCTTCGAAAAGTTTGTTCAGAAAAGAATATAGCGAATAATCTA 558
||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 635 AGAGAGTTAAAAGAGTTTCTTCGTAAAGTTTGTTCTGAAAAGAATATAGCGAATAATCTA 694
Query 559 GAAATGCTCTTAGAGAAAAAGGCACAAGATGTTGGTTTATTGGTATCTCAAAGAGTGATG 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 GAAATGCTCTTAGAGAAAAAGGCACAAGATGTTGGTTTATTGGTATCTCAAAGAGTGATG 754
Query 619 AACCTTCCTCCACAACTTCTTCCTCCACTGTACGATGGATTGTTCGATGAAGTCTCATGG 678
|| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 755 AATCTTCCTCCACAACTTCTTCCTCCACTTTATGATGGATTGTTCGATGAAGTCTCATGG 814
Query 679 GCCA-CTGAAGACGAGCCTACAGAAGAGCTTCGAAGATCATTCCGCTTCAAGTCATATCT 737
|| | | ||||| |||||||||||| ||||||||||||||||||| || |||||||||||
Sbjct 815 GCAATC-GAAGATGAGCCTACAGAAAAGCTTCGAAGATCATTCCGTTTTAAGTCATATCT 873
Query 738 TCTAATTACCAAGATTTACAAGCTGAAGAATCCTAAGCAGAGAAAACCTCGACATGGTGA 797
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 TCTAGTTACCAAGATTTACAAGCTGAAGAATCCTAAGCAGAGAAAACCTCGACATGGTGA 933
Query 798 AGA---CATTGAAGAAACAATATTTCTTAAGCCTGAAGATGAACTCTTTCTCGAGCTTAG 854
||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 934 AGAAGACATTGAAGACACAGTATTTCTTAAGCCTGAAGATGAACTCTTTCTCGAGCTTAG 993
Query 855 TTCTTGGTCCTTCACATTCCCTATGCGCTCACAGCTCGTTACTTCCCAAGAAATGAAGAA 914
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 CTCTTGGTCCTTCACATTCCCTATGCGCTCACAGCTCGTTACTTCCCAAGAAATGAAGAA 1053
Query 915 TTATCAGTTGATGGGTTTAGTGATGGCCGTGGAAGCAAACAAGATTCCTAAATTCAGACA 974
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 TTATCAGCTGATGGGTTTAGTGATGGCCGTGGAAGCAAACAAGATTCCTAAATTCAGACA 1113
Query 975 GATGTTGAACTCTCTTATTGATGAACAATGATGAACATCTTCTTCTTAAAG 1025
||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1114 GATGTTGAACTCTCTCATTGATTAACAATGATGAACATCTTCTTCTTAAAG 1164
> AT5G03830.1 | Symbols: | CDK inhibitor P21 binding protein |
chr5:1018338-1020460 FORWARD LENGTH=1282
Length=1282
Score = 477 bits (258), Expect = 9e-134
Identities = 354/400 (89%), Gaps = 7/400 (2%)
Strand=Plus/Plus
Query 364 AGCA-GTTTTGTTGATTTCATATTGGAGCAAACAACTG-TAGGAACTGTTGTAAAAGTTG 421
|||| ||||||| ||||| ||| || | |||||| | | |||||||||| |||||||| |
Sbjct 333 AGCAGGTTTTGTGGATTTGATACTGAATCAAACAGC-GTTAGGAACTGTGGTAAAAGTAG 391
Query 422 CAGATGATGAGGACGAGTCAGTATTTGCTCTTGTCACTGCTCTTAACATGGCAAGATATA 481
||||||||||||| ||| || ||||||||||| |||||||||||||| |||||||||| |
Sbjct 392 CAGATGATGAGGATGAGGCATTATTTGCTCTTATCACTGCTCTTAACTTGGCAAGATACA 451
Query 482 AGGACAACAAGTGCTTTAGAGA-CTTAAAAGAGTTTCTTCGAAAAGTTTGTTCAGAAAAG 540
|||| || |||||||||||||| | ||||||||||||||| ||||||||||| || |||
Sbjct 452 AGGAGAATAAGTGCTTTAGAGAGC-TAAAAGAGTTTCTTCTTAAAGTTTGTTCGGAGAAG 510
Query 541 AATATAGCGAATAATCTAGAAATGCTCTTAGAGAAAAAGG-CACAAGATGTTGGTTTATT 599
||| |||||| | |||||||| | |||||||||||||||| || ||||||||||||||||
Sbjct 511 AATGTAGCGAGTGATCTAGAACTACTCTTAGAGAAAAAGGCCA-AAGATGTTGGTTTATT 569
Query 600 GGTATCTCAAAGAGTGATGAACCTTCCTCCACAACTTCTTCCTCCACTGTACGATGGATT 659
||| ||||||||||||||||| ||||||| |||||| ||||||||||| || ||||||||
Sbjct 570 GGTCTCTCAAAGAGTGATGAATCTTCCTCTACAACTCCTTCCTCCACTATATGATGGATT 629
Query 660 GTTCGATGAAGTCTCATGGGCCACTGAAGACGAGCCTACAGAAGAGCTTCGAAGATCATT 719
|||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 630 GTTCGACGAAGTCTCATGGGCCACTGAAGACGAGCCTACAGAAGAGCTTCGAGGGTCATT 689
Query 720 CCGCTTCAAGTCATATCTTCTAATTACCAAGATTTACAAG 759
|||||||||||||||| ||||||| | ||||| ||||||
Sbjct 690 CCGCTTCAAGTCATATATTCTAATCGCTAAGATCTACAAG 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50234147000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5