BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935391
Length=1231
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44530.1 | Symbols: | Phosphoribosyltransferase family prot... 2097 0.0
> AT2G44530.1 | Symbols: | Phosphoribosyltransferase family protein
| chr2:18383515-18386143 FORWARD LENGTH=1571
Length=1571
Score = 2097 bits (1135), Expect = 0.0
Identities = 1200/1232 (97%), Gaps = 1/1232 (0%)
Strand=Plus/Plus
Query 1 TCTCTCTCCGGATCCAGTTCTCGAACATGGCGTCTATTGTTCAACCATCGCCTACTTTTC 60
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 192 TCTCTCTCCGGATCCATTTCTCGAACATGGCGTCTATTGTTCAACCATCGCCTACTTTCC 251
Query 61 CGGCGCTAAATCTCCGGCGTTCTTCTCTGACTCGTCCTCCTTCTTCCGTTCGATTTCCTC 120
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 252 CGGCGCTAAATCTCCGGCGTTCTTCTCTGATTCGTCCGCCTTCTTCCGTTCGATTTCCTC 311
Query 121 TTAAGTGTAACGCGGCGGATCCGTACAAGTTCGACGGCGGAAACTCCGCCGGTTTCCATC 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 312 TTAAGTGTAACGCGGCGGATCCGTACAAGTTCGACGGCGGAAACTCTGCCGGTTTCCATC 371
Query 181 TGCTTACAGGCGACACCGTTCCCGCTAGCTTTTCGAGGTCTCGTTTGGAAGATTCGATCT 240
||||||| |||||||||||||| ||||||||||||||| | ||||||||||||||||| |
Sbjct 372 TGCTTACTGGCGACACCGTTCCGGCTAGCTTTTCGAGGACACGTTTGGAAGATTCGATTT 431
Query 241 ACCAGAACACCACACGACTTCGTATCTTTTCCGGCACTGCTAATCCTATTTTGGCTCAGG 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 ATCAGAACACCACACGACTTCGTATCTTTTCCGGCACTGCTAATCCTATTTTGGCTCAGG 491
Query 301 AGATTTCTTGCTATTTGGGTCTGGAGCTTGGGAAAATCAAGATTAAACGTTTTGCTGATG 360
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 492 AGATTTCTTGCTATTTGGGTCTGGACCTTGGGAAAATCAAGATTAAACGCTTTGCTGATG 551
Query 361 GTGAGATCTATGTTCAGCTGCAAGAGAGTGTAAGGGGATGTGATGTGTTCCTTGTACAGC 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 552 GTGAGATCTATGTTCAGCTACAAGAGAGTGTAAGGGGATGTGATGTGTTCCTTGTACAGC 611
Query 421 CTACATGCCCACCTGCTAATGAAAACCTTATGGAATTGCTCGTTATGATTGACGCTTGTC 480
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 612 CTACATGCCCACCTGCAAATGAAAACCTTATGGAATTGCTCGTTATGATTGATGCTTGTC 671
Query 481 GGAGAGCATCAGCCAAAACCATCACAGCTGTGATTCCTTACTTTGGTTATGCACGAGCTG 540
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 672 GGAGAGCATCAGCCAAAACTATCACGGCTGTGATTCCTTACTTTGGTTATGCACGAGCTG 731
Query 541 ATAGAAAGACTCAAGGACGTGAATCGATTGCAGCCAAGCTTGTGGCCAATTTGATTACAC 600
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 732 ATAGAAAGACTCAAGGACGTGAATCTATTGCAGCCAAGCTTGTGGCCAATTTGATTACAC 791
Query 601 AGTCTGGTGCAGACCGTGTCCTTGCTTGTGATCTTCACTCCGGACAGTCTATGGGCTACT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 AGTCTGGTGCAGACCGTGTCCTTGCTTGTGATCTTCACTCCGGACAGTCTATGGGCTACT 851
Query 661 TTGATATTCCAGTCGATCATGTTTATGGCCAGCCTGTCATACTTGATTACCTAGCAAGTA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 TTGATATTCCAGTCGATCATGTTTATGGCCAGCCTGTCATACTTGATTACCTAGCAAGTA 911
Query 721 AGGCCATATCCTCTGAAGATTTGGTGGTAGTTTCACCTGACGTTGGTGGCGTTGCAAGAG 780
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 912 AGGCCATATCCTCTGAAGATTTGGTGGTAGTTTCACCTGATGTTGGTGGCGTCGCAAGAG 971
Query 781 CTCGTGCTTTTGCCAAGAAGTTATCTGATGCACCTTTAGCAATAGTTGATAAAAGACGTC 840
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 CTCGCGCTTTTGCGAAGAAGTTATCTGATGCACCTTTAGCAATAGTTGATAAAAGACGTC 1031
Query 841 ATGGGCACAATGTTGCAGAGGTGATGAACTTAATCGGGGATGTTAAGGGGAAAGTAGCCA 900
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1032 ATGGGCACAATGTTGCAGAGGTGATGAACTTAATTGGGGATGTTAAAGGGAAAGTAGCCA 1091
Query 901 TAATGGTGGATGACATGATTGACACAGCAGGAACCATAAGCAAAGGTGCGGCTCTGTTAC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 TAATGGTGGATGACATGATTGACACAGCAGGAACCATAAGCAAAGGTGCGGCTCTGTTAC 1151
Query 961 ACCAAGAAGGAGCAAGAGAAGTGTACGCTTGTACCACTCATGCCGTTTTTAGCCCTCCTG 1020
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1152 ACCAAGAAGGAGCAAGAGAAGTATACGCTTGTACCACTCATGCCGTTTTTAGCCCTCCTG 1211
Query 1021 CAATCAGTAGGCTATCGAGTGGACTGTTTCAAGAGGTGATCATAACCAACACGATTCCAT 1080
|||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 CAATCAGTCGACTATCGAGCGGACTGTTTCAAGAGGTGATCATAACCAACACGATTCCAT 1271
Query 1081 TGTCAGAGCAGAACTATTTTCCTCAGCTTACAGTTCTCTCAGTAGCAAACCTTCTTGGGG 1140
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 TGTCAGAGAAGAACTATTTTCCTCAGCTTACAGTTCTCTCAGTAGCAAACCTTCTTGGGG 1331
Query 1141 AGACCATATGGCGTGTTCATGATGATTGCTCTGGAGCCATTGAGCCATTTTCGACGTTGG 1200
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1332 AGACCATATGGCGTGTTCATGATGATTGCTCGGGAGCCATTGAGCCATTTTCGACGTTGG 1391
Query 1201 GGATTGATTGAGTGATGGAAAA-GGGTAAAGA 1231
|||||||||||||||||||||| |||||||||
Sbjct 1392 GGATTGATTGAGTGATGGAAAAAGGGTAAAGA 1423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60491656725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5