BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935395
Length=479
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44578.1 | Symbols: | RING/U-box superfamily protein | chr2... 667 0.0
AT2G44581.1 | Symbols: | RING/U-box superfamily protein | chr2... 560 4e-159
> AT2G44578.1 | Symbols: | RING/U-box superfamily protein | chr2:18400646-18401326
REVERSE LENGTH=681
Length=681
Score = 667 bits (361), Expect = 0.0
Identities = 422/452 (93%), Gaps = 2/452 (0%)
Strand=Plus/Plus
Query 10 ATTGTCTCGAGAATGTTTGTTGAATCAGTGATTAGATTCTCTCATTTCATCGTCGAATTT 69
||| |||||||||||||| ||||| | ||||||||||||||||| |||||| |||||
Sbjct 14 ATTTTCTCGAGAATGTTTATTGAAACTGTGATTAGATTCTCTCAGATCATCGCCGAATCC 73
Query 70 GTCATTATCGCCTCCATCGTCGTCTTCACTCTCCGTCTCTTCTTTAGATTCGCTTGTTTC 129
||||| ||||||||| |||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 74 GTCATCATCGCCTCCGTCGTCGTCTTGACTCTCCGTCTCTTCTTCAGATTCGCTTGTTTC 133
Query 130 CTCGCCAGCCGTCCTTGGCGTCGTTACCGTACATTCACGGTCCATCATCGCCGGAGATGG 189
||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 134 CTCGCGAGCCGTTCTTGGCGTCGTTACCGTACATTCACGGTCCAACATCGCCGGAGATGG 193
Query 190 AGAAAAACCACGGCGGAGGAAAAACATTCGTCACCGTATTGTACGATTTGTCTCGAAGAT 249
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 194 AGAAAAACCGCGGCGGAGGAAAAACATTCATCACCGTATTGTACGATTTGTCTCGAAGAT 253
Query 250 GCGGCGGCGGGAGAGAAGATGAGGCGGATAACGACGTGCAATCACTGTTTCCACGCCGAT 309
||||||| ||||||||||||||||||||||||| |||||| |||||||||||||| ||||
Sbjct 254 GCGGCGGAGGGAGAGAAGATGAGGCGGATAACGGCGTGCAGTCACTGTTTCCACGTCGAT 313
Query 310 TGCATCGATCCGTGGCTAGA-GAAGAAGTCCACGTGTCCTTTGTGTAGAGCTGAGATACC 368
||||||||||||||| | || |||||||||||||||||| ||||| ||||||||||||||
Sbjct 314 TGCATCGATCCGTGG-TTGATGAAGAAGTCCACGTGTCCATTGTGCAGAGCTGAGATACC 372
Query 369 GCCGGTGCCGCCGGGAAATCCTCTGGTGGCGCTTTTTGTTCCTCCCGGCGTGATTGAGAT 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 GCCGGTGCCGCCGGGAAATCCTCTGGTGGCGCTTTTTGTTCCTCCCGGCGTGATTGAGAT 432
Query 429 GTTCACTAAAGGAATTATCTCCGACGCGTAGG 460
|||||| |||||||| ||| ||||||||||||
Sbjct 433 GTTCACCAAAGGAATCATCCCCGACGCGTAGG 464
> AT2G44581.1 | Symbols: | RING/U-box superfamily protein | chr2:18397996-18398433
REVERSE LENGTH=438
Length=438
Score = 560 bits (303), Expect = 4e-159
Identities = 397/442 (90%), Gaps = 8/442 (2%)
Strand=Plus/Plus
Query 22 ATGTTTGTTGAATCAGTGATT-AGATTCTCTCATTTCATCGTCGAATTTGTCATTATCGC 80
|||||||||||| | |||||| | | ||||||| ||||| | ||||| ||||||||||
Sbjct 1 ATGTTTGTTGAAACTGTGATTCA-ACTCTCTCAGTTCATTGCCGAATCCGTCATTATCGT 59
Query 81 CTCCATCGTCGTCTTCACTCTCCGTCTCTTCTTTAGATTCGCTTGTTTCCTCGCCAGCCG 140
||| | | ||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 60 CTCTGTAGCCGTCTTCACTCTCCGTCTCTTCTATAGATTCGCTTGTTTCCTCGCGAGCCG 119
Query 141 TCCTTGGCGTCGTTACCGTACATTCACGGTCCATCATCGCCGGAGATGGAGAAAAACCAC 200
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTCTTGGCGTCGTTACCGTACATTCACGGTCCATCATCGCCGGAGATGGAGAAAAACCAC 179
Query 201 GGCGGAGGAAAAACATTCGTCACCGTATTGTACGATTTGTCTCGAAGATGCGGCGGCGGG 260
|| |||||||||||||| ||||||||||||||||||||||||||| ||||| ||| |||
Sbjct 180 AGCCGAGGAAAAACATTCATCACCGTATTGTACGATTTGTCTCGAAAATGCGACGGAGGG 239
Query 261 AGAGAAGATGAGGCGGATAAC-GACGTGCAATCACTGTTTCCACGCCGATTGCATCGATC 319
||| ||||||||||||||| | | | |||| |||||||||||||| ||||||||| ||||
Sbjct 240 AGAAAAGATGAGGCGGATAGCAG-CATGCAGTCACTGTTTCCACGTCGATTGCATTGATC 298
Query 320 CGTGGCTAGAGAAGAAGTCCACGTGTCCTTTGTGTAGAGCTGAGATACCGCCGGTGCCGC 379
||||| | ||||||||||||| |||||||||||||||||||||||| |||||||| ||||
Sbjct 299 CGTGGTTGGAGAAGAAGTCCATGTGTCCTTTGTGTAGAGCTGAGATCCCGCCGGTCCCGC 358
Query 380 CGGGAAATCCTCTG-GTGGCGCTTTTTGTTCCTCCCGGCGTGATTGAGATGTTCACTAAA 438
|||||||||||||| | | |||||||| |||||||||||||||||||||||||||| |||
Sbjct 359 CGGGAAATCCTCTGCGCG-CGCTTTTTATTCCTCCCGGCGTGATTGAGATGTTCACCAAA 417
Query 439 GGAATT-ATCTCCGACGCGTAG 459
||||| | |||||||||||||
Sbjct 418 GGAATCGA-CTCCGACGCGTAG 438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22806302738
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5