BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935396
Length=522
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44578.1 | Symbols: | RING/U-box superfamily protein | chr2... 625 1e-178
AT2G44581.1 | Symbols: | RING/U-box superfamily protein | chr2... 547 3e-155
> AT2G44578.1 | Symbols: | RING/U-box superfamily protein | chr2:18400646-18401326
REVERSE LENGTH=681
Length=681
Score = 625 bits (338), Expect = 1e-178
Identities = 413/449 (92%), Gaps = 6/449 (1%)
Strand=Plus/Plus
Query 9 ATTTTCTCGAGAATGTTTATTGAATCAGTGATTAGATTCTCTGA-ATTCATTGCCGAATC 67
|||||||||||||||||||||||| | ||||||||||||||| | | |||| ||||||||
Sbjct 14 ATTTTCTCGAGAATGTTTATTGAAACTGTGATTAGATTCTCTCAGA-TCATCGCCGAATC 72
Query 68 CGTCATCATCGTCTCCGTCGTCGTCTTCTCTCTCCGTCTCTTCTTTAGATTCGCTTGTTT 127
||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 73 CGTCATCATCGCCTCCGTCGTCGTCTTGACTCTCCGTCTCTTCTTCAGATTCGCTTGTTT 132
Query 128 CCTCGCCAGCCGACCTTGGCGTCGTTACCGTACATTCACGGTCCATCATCGCCGGAGATG 187
|||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 133 CCTCGCGAGCCGTTCTTGGCGTCGTTACCGTACATTCACGGTCCAACATCGCCGGAGATG 192
Query 188 GAGAAAAACCACGGCGGAGGAAAAACATTCATCACCGTACTGTACGATTTGTCTCGAATA 247
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 193 GAGAAAAACCGCGGCGGAGGAAAAACATTCATCACCGTATTGTACGATTTGTCTCGAAGA 252
Query 248 TGCAACGGAAGGAGAAAAGATGAGGAGGATATCGGCGTGCAATCACTGTTTCCACGCT-G 306
||| |||| ||||| ||||||||| ||||| ||||||||| |||||||||||||| | |
Sbjct 253 TGCGGCGGAGGGAGAGAAGATGAGGCGGATAACGGCGTGCAGTCACTGTTTCCACG-TCG 311
Query 307 ATTGTATCGATCCGTGGTTTGA-GAAGAAGTCTACGTGTCCTTTGTGTAGAGCTGAGATA 365
|||| |||||||||||| |||| ||||||||| |||||||| ||||| ||||||||||||
Sbjct 312 ATTGCATCGATCCGTGG-TTGATGAAGAAGTCCACGTGTCCATTGTGCAGAGCTGAGATA 370
Query 366 CCTCCGGTGCCGCCGGGAAATCCTCTGGTGGCGCTTTTTGTGCCTCCCGGCGTGATCGAG 425
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 371 CCGCCGGTGCCGCCGGGAAATCCTCTGGTGGCGCTTTTTGTTCCTCCCGGCGTGATTGAG 430
Query 426 ATGTTCACCAAAGGAATCATCTCCGACGC 454
||||||||||||||||||||| |||||||
Sbjct 431 ATGTTCACCAAAGGAATCATCCCCGACGC 459
> AT2G44581.1 | Symbols: | RING/U-box superfamily protein | chr2:18397996-18398433
REVERSE LENGTH=438
Length=438
Score = 547 bits (296), Expect = 3e-155
Identities = 392/438 (89%), Gaps = 8/438 (2%)
Strand=Plus/Plus
Query 21 ATGTTTATTGAATCAGTGATT-AGATTCTCTGAATTCATTGCCGAATCCGTCATCATCGT 79
|||||| ||||| | |||||| | | ||||| | |||||||||||||||||||| |||||
Sbjct 1 ATGTTTGTTGAAACTGTGATTCA-ACTCTCTCAGTTCATTGCCGAATCCGTCATTATCGT 59
Query 80 CTCCGTCGTCGTCTTCTCTCTCCGTCTCTTCTTTAGATTCGCTTGTTTCCTCGCCAGCCG 139
||| || | ||||||| ||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 60 CTCTGTAGCCGTCTTCACTCTCCGTCTCTTCTATAGATTCGCTTGTTTCCTCGCGAGCCG 119
Query 140 ACCTTGGCGTCGTTACCGTACATTCACGGTCCATCATCGCCGGAGATGGAGAAAAACCAC 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTCTTGGCGTCGTTACCGTACATTCACGGTCCATCATCGCCGGAGATGGAGAAAAACCAC 179
Query 200 GGCGGAGGAAAAACATTCATCACCGTACTGTACGATTTGTCTCGAATATGCAACGGAAGG 259
|| ||||||||||||||||||||||| |||||||||||||||||| |||| ||||| ||
Sbjct 180 AGCCGAGGAAAAACATTCATCACCGTATTGTACGATTTGTCTCGAAAATGCGACGGAGGG 239
Query 260 AGAAAAGATGAGGAGGATATCGGCGTGCAATCACTGTTTCCACG-CTGATTGTATCGATC 318
||||||||||||| ||||| | || |||| |||||||||||||| | ||||| || ||||
Sbjct 240 AGAAAAGATGAGGCGGATAGCAGCATGCAGTCACTGTTTCCACGTC-GATTGCATTGATC 298
Query 319 CGTGGTTTGAGAAGAAGTCTACGTGTCCTTTGTGTAGAGCTGAGATACCTCCGGTGCCGC 378
||||||| ||||||||||| | |||||||||||||||||||||||| || ||||| ||||
Sbjct 299 CGTGGTTGGAGAAGAAGTCCATGTGTCCTTTGTGTAGAGCTGAGATCCCGCCGGTCCCGC 358
Query 379 CGGGAAATCCTCTG-GTGGCGCTTTTTGTGCCTCCCGGCGTGATCGAGATGTTCACCAAA 437
|||||||||||||| | | |||||||| | |||||||||||||| |||||||||||||||
Sbjct 359 CGGGAAATCCTCTGCGCG-CGCTTTTTATTCCTCCCGGCGTGATTGAGATGTTCACCAAA 417
Query 438 GGAATC-ATCTCCGACGC 454
|||||| | |||||||||
Sbjct 418 GGAATCGA-CTCCGACGC 434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24966371059
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5