BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935400
Length=758
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44610.1 | Symbols: RAB6, ATRABH1B, ATRAB6A, RAB6A | Ras-rel... 1293 0.0
> AT2G44610.1 | Symbols: RAB6, ATRABH1B, ATRAB6A, RAB6A | Ras-related
small GTP-binding family protein | chr2:18411426-18414081
REVERSE LENGTH=1177
Length=1177
Score = 1293 bits (700), Expect = 0.0
Identities = 734/751 (98%), Gaps = 0/751 (0%)
Strand=Plus/Plus
Query 1 CCACAGCGACGGGATCTCTCTCCGGTAAATATCGGAAACtttttttCTCAGCAAAGCGAG 60
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 90 CCAGAGCGACGGGATCTCTCTCCGGTAAATATCGGAAACTTTTATTCTCAGCAAAGCGAG 149
Query 61 ATCTCGACGTTTCTCAGATCCGTCCGGCGAGTTAGATCTTTGAGAAATCATGGCTCCGGT 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 150 ATCTCGACGTTTCTCAGATCCGTCCGGCGAGTTAGATCCTTGAGAAATCATGGCTCCGGT 209
Query 121 CTCGGCACTCGCCAAGTATAAGCTGGTGTTTCTGGGAGATCAATCCGTCGGCAAAACCAG 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 CTCGGCACTCGCTAAGTATAAGCTGGTGTTTCTGGGAGATCAATCCGTCGGCAAAACCAG 269
Query 181 TATCATCACTCGATTCATGTACGACAAATTCGACAATACTTACCAGGCCACAATTGGTAT 240
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 270 TATCATTACTCGATTCATGTACGACAAATTCGACAACACTTACCAGGCCACAATTGGTAT 329
Query 241 TGATTTTCTATCAAAGACAATGTACCTTGAAGATCGAACGGTCAGACTTCAGTTGTGGGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 TGATTTTCTATCAAAGACAATGTACCTTGAAGATCGAACGGTCAGACTTCAGTTGTGGGA 389
Query 301 TACGGCTGGGCAAGAGCGATTCAGGAGTCTAATTCCGAGCTATATCAGGGATTCCTCTGT 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 390 TACAGCTGGGCAAGAGCGATTCAGGAGTCTAATTCCGAGCTATATCAGGGATTCCTCCGT 449
Query 361 TGCTGTTATTGTGTATGATGTTGCAAGCAGGCAATCCTTCCTAAACACTACTAAGTGGAT 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 450 TGCTGTTATTGTGTATGATGTTGCAAGCAGGCAGTCCTTCCTAAACACTACTAAGTGGAT 509
Query 421 CGATGAGGTTAGGACAGAGCGTGGTAGTGATGTCATAGTTGTGCTTGTGGGTAACAAAAC 480
|||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 510 CGATGAGGTTAGGACAGAACGTGGTAGTGATGTCATAGTCGTGCTTGTGGGAAACAAAAC 569
Query 481 TGACCTTGTGGACAAAAGGCAAGTGTCAATAGAGGAAGCAGAAGCTAAGGCTCGTGAACT 540
||| || |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 570 TGATCTAGTGGACAAAAGGCAAGTGTCAATAGAGGAAGCAGAAGCTAAGGCACGCGAACT 629
Query 541 TAATGTAATGTTCATCGAAACCAGTGCCAAAGCGGGCTTCAACATTAAGGCGCTCTTCCG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 TAATGTAATGTTCATCGAAACCAGTGCCAAAGCGGGCTTCAACATTAAGGCGCTCTTCCG 689
Query 601 CAAGATAGCAGCAGCTTTGCCGGGAATGGAGACATTGTCTTCAACAAAGCAAGAGGATAT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 CAAGATAGCAGCAGCTTTGCCGGGAATGGAGACATTGTCTTCAACAAAGCAAGAGGATAT 749
Query 661 GGTTGATGTCAATCTCAAGTCTTCCAATGCAAATGCATCTCTCGCTCAGCAGCAATCAGG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 GGTTGATGTCAATCTCAAGTCTTCCAATGCAAATGCATCTCTCGCTCAGCAGCAATCAGG 809
Query 721 AGGATGCTCTTGTTAGATTTGGCAACAGCAA 751
||||||||||||||||||||||||||| |||
Sbjct 810 AGGATGCTCTTGTTAGATTTGGCAACAACAA 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36821629751
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5