BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935403
Length=1346
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44170.1 | Symbols: NMT2, ATNMT2 | pseudogene, myristoyl-CoA... 1253 0.0
AT5G57020.1 | Symbols: NMT1, ATNMT1 | myristoyl-CoA:protein N-m... 1120 0.0
AT2G44175.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) sup... 65.8 1e-09
> AT2G44170.1 | Symbols: NMT2, ATNMT2 | pseudogene, myristoyl-CoA:protein
N-myristoyltransferase (NMT), putative, similar to
N-myristoyltransferase 1 (NMT1) (Arabidopsis thaliana) GI:7339834;
contains Pfam profiles PF01233: Myristoyl-CoA:protein
N-myristoyltransferase N-terminal domain, PF02799: Myristoyl-CoA:protein
N-myristoyltransferase C-terminal domain; gene
contains a frameshift. This could be a pseudogene or a sequencing
error.; blastp match of 62% identity and 5.1e-121
P-value to GP|20804654|dbj|BAB92343.1||AP003273 putative N-myristoyl
transferase {Oryza sativa (japonica cultivar-group)}
| chr2:18265431-18267426 REVERSE LENGTH=1996
Length=1996
Score = 1253 bits (678), Expect = 0.0
Identities = 1044/1214 (86%), Gaps = 52/1214 (4%)
Strand=Plus/Plus
Query 134 AGTTGGAAGGTTA---CAGTG---TTACTCAAAGACCCATAAGTTCTGGGAGACTCAACC 187
||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 672 AGTTGGAAGGTTACTGCAGTGCCAGTATTCAAAGACCCATAAGTTCTGGGAGACTCAACC 731
Query 188 TGTTGTGCAGTATAAGGATATCGGAG-ACACGAGTTTGCCTGAAGGCCCAATTGATCCCG 246
||||| ||||| ||| |||||| || |||||||||||||||||||||||||||| ||||
Sbjct 732 TGTTGAGCAGTTTAAAGATATCC-AGGACACGAGTTTGCCTGAAGGCCCAATTGAGCCCG 790
Query 247 CAACTTTGGTATCTGAGGTCAAGCCAGAGCCGTATAACCTTCCTGGTCAATTCGAATGGA 306
|||||||||| ||||||||||||| ||||||||| ||||||| |||||||||||||||||
Sbjct 791 CAACTTTGGTGTCTGAGGTCAAGCAAGAGCCGTACAACCTTCTTGGTCAATTCGAATGGA 850
Query 307 CCACATGCGATATGAAATCTGATGATACGTGTGCAGAGGTGTACAAGTTTTTCAAGGAAA 366
||| |||||||||||| ||||| |||| |||| |||| ||||||| ||| |||||||||
Sbjct 851 CCATATGCGATATGAACTCTGACGATATGTGTTTAGAGATGTACAACTTTCTCAAGGAAA 910
Query 367 ACTA-TCCTGATGATGGATATCAGTTCATGGT-TGAGTACTCCAGGGAGTTTCTAAGGTG 424
|| | ||||||||| | | ||| ||| | | ||||||||||| |||| |||||||||
Sbjct 911 AC-AGTCCTGATGAC--A-A-CAGATCAAG-TATGAGTACTCCAAAGAGTATCTAAGGTG 964
Query 425 GGCATTGTGTCCACCTGGTTATCACCAGAGCTGGCATATTGGAGTCCGTGTCAAGACCTC 484
|||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 965 GGCACTGTGTCCACCTGGTTATTACCAGAGCTGGCATATTGGAGTCCGCGTCAAGACCTC 1024
Query 485 CAAGAAACTCGTTGCTTTCATCAGTGGC-GTGCCATCAAGAATCAGGGTGCGTGCTGAGG 543
|||||||||| ||||||||||| ||||| | |||| |||||||||||||||||| |||||
Sbjct 1025 CAAGAAACTCATTGCTTTCATCTGTGGCAG-GCCAACAAGAATCAGGGTGCGTGATGAGG 1083
Query 544 TT-TTGAAAATGCCAAAGATCAATCTC-TTGTGTGTTCACAAGAAGAACCTCAGGTCTAA 601
|| || |||||| | ||| ||||| || |||||||||||||||||| | ||||||||||
Sbjct 1084 TTGTT-AAAATGGCGAAGGTCAAT-TCCTTGTGTGTTCACAAGAAG--C-TCAGGTCTAA 1138
Query 602 GGGACTTGCTCCTGTCTTGATCAAGGAGCTGACTAGAAGGGTTCACTTGCAGAATATATG 661
||||||||||||| || ||||||||||| |||||||||||||| | ||||||||||||||
Sbjct 1139 GGGACTTGCTCCTCTCATGATCAAGGAGTTGACTAGAAGGGTTAAGTTGCAGAATATATG 1198
Query 662 GCAGGCGGCTTATACCTCACTTGATGTACTTCCTACACCAGTCACCACCTGCCAATACTG 721
||| ||||||||||||||| | || ||||| ||| |||||| |||||| | | | ||||
Sbjct 1199 GCAAGCGGCTTATACCTCAAGTCATATACTTTCTAGACCAGTTACCACCAGTCGAGACTG 1258
Query 722 GGTCAGAATGTTGAAACCTAAGAAGCTAATCGATGTTGGAT-ATTCAACACTTCGTGAAA 780
||||||||||||||| || |||||||||||||||||||| | | ||| |||||||| |
Sbjct 1259 GGTCAGAATGTTGAACCCGAAGAAGCTAATCGATGTTGGGTTAA-CAAGGCTTCGTGACA 1317
Query 781 GAATGACACTGAGCATGACCGTCAAACTTTACAAGCTACCTGATGCACCGATCACTCCTG 840
|||||||| |||||| |||||||||||| |||||| |||| |||||||||||||||||||
Sbjct 1318 GAATGACAATGAGCAGGACCGTCAAACTCTACAAGTTACCAGATGCACCGATCACTCCTG 1377
Query 841 GATTCAGGGAAATGGACCGACGTGATGTCCCTGCTGTTACAAAGTTGCTCAGGAACTACC 900
|||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 1378 GATTTAGGGAAATGGAGCGACGTGATGTCCCTGCTGTTACAGCGTTGCTCAGGAACTACC 1437
Query 901 TCCGCCAGTTTGGAGTTGCGACGGACTTTGGTGAAAAGGACGTCGAGCACTGGCTTCTCC 960
| ||||||||| ||||||||| ||||||| ||| || || ||| |||||||||||||||
Sbjct 1438 TTAGCCAGTTTGCAGTTGCGACTGACTTTGATGACAACGATGTCAAGCACTGGCTTCTCC 1497
Query 961 CAAG--AAAAGATGTCGTCCACAGTTACTTAGTAG-AAG-----AAACTCATGACGTGAT 1012
|||| |||| || | ||| |||||||| |||||| ||| |||||||||| || |
Sbjct 1498 CAAGGGAAAATAT-T-GTCTACAGTTACGTAGTAGTAAGCCCTGAAACTCATGA--TG-T 1552
Query 1013 CACTGACTTTTGCAGCTTCTACACTGTCC-CTTTAACTATCGTCGGTAACCCGAAATACA 1071
||||||||| |||||||||| || | ||| || |||||||| |||||||| ||||||||
Sbjct 1553 CACTGACTTCTGCAGCTTCTGCAAT-TCCTCTATAACTATCCCCGGTAACCGGAAATACA 1611
Query 1072 AAACAGTGGAATGTGCTTATTCTTACTATAATGTCGCGACTAA-GACCTCCTT-TCCCCA 1129
|| |||||||||||||| ||| || ||||| ||||| | |||||| || |||| |
Sbjct 1612 CGACCCTGGAATGTGCTTATGCTTGCTGCAATGTAGCGAC-ACTGACCTCGTTATCCC-A 1669
Query 1130 GCTGATGAATGATGCGCTAATCA-TCTCTAAGCAAAAAGGTTTCGATGTGTTCTACGCGT 1188
|||| |||||||||| ||||| | |||||||||||||||||||||||||||| || || |
Sbjct 1670 GCTGGTGAATGATGCCCTAAT-AGTCTCTAAGCAAAAAGGTTTCGATGTGTTTTATGCCT 1728
Query 1189 TGGATGTTATGCACAATGAGAGTTTCTTAAAAGAGTTGAAGTTTGATCAAGGA-GATGGA 1247
|||||| ||||| |||||||||||||| |||||||||| |||| ||| | | | | ||
Sbjct 1729 CGGATGTGATGCAGAATGAGAGTTTCTTGAAAGAGTTGAGGTTTTATCCACTATG-TCGA 1787
Query 1248 CAGAT-GCACTACTATCTCTATAATTACCGTTTGAGAAGTGCATTGAAGCCATCAGAACT 1306
||| | ||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1788 CAG-TCGCACTACTATCTCTACAATTACCGTTTGAGAAATGCATTGAAGCCATCAGAACT 1846
Query 1307 TGGGCTCGTTCTTT 1320
|||||| ||||||
Sbjct 1847 TGGGCTTATTCTTT 1860
> AT5G57020.1 | Symbols: NMT1, ATNMT1 | myristoyl-CoA:protein N-myristoyltransferase
| chr5:23074867-23076901 FORWARD LENGTH=1720
Length=1720
Score = 1120 bits (606), Expect = 0.0
Identities = 1008/1197 (84%), Gaps = 47/1197 (4%)
Strand=Plus/Plus
Query 157 CAAAGACCCATAAGTTCTGGGAGACTCAACCTGTTGTGCAGTATAAGGATATCGGAGACA 216
||||||| |||||||||||||||||||||||||||| ||||| ||||||||| || || |
Sbjct 403 CAAAGACTCATAAGTTCTGGGAGACTCAACCTGTTGGGCAGTTTAAGGATATTGGGGATA 462
Query 217 CGAGTTTGCCTGAAGGCCCAATTGATCCCGCAACTTTGGTATCTGAGGTCAAGCCAGAGC 276
|||||||||||||||| || ||||| || |||||| |||||||||| |||| |||||
Sbjct 463 CGAGTTTGCCTGAAGGTCCGATTGAGCCTGCAACTCCATTATCTGAGGTTAAGCAAGAGC 522
Query 277 CGTATAACCTTCCTGGTCAATT--CGAATGGACCACATGCGATATGAAATCTGATGATAC 334
|||| ||||||||| || || ||| ||||| ||||| |||||||| ||||||||||
Sbjct 523 CGTACAACCTTCCT--TCTGTTTACGAGTGGACGACATGTGATATGAACTCTGATGATAT 580
Query 335 GTGTGCAGAGGTGTACAAGTTTTTCAAGGAA-AACTATCCTGA---TGATG-GA-TATCA 388
|||| ||||||| ||||| || ||||| || |||||| ||| ||||| || |||
Sbjct 581 GTGTTCAGAGGTATACAACCTTCTCAAG-AACAACTATGTTGAGGATGATGAGAATAT-- 637
Query 389 GTTCATGGTTGAGT-ACTCCAGGGAGTTTCTAAGGTGGGCATTGTGTCCACCTGGTTATC 447
||||| |||| | | |||||| ||||||||||||||||||| | ||||||| ||||||
Sbjct 638 GTTCA-GGTTCAATTACTCCAAGGAGTTTCTAAGGTGGGCACTACGTCCACCGGGTTATT 696
Query 448 ACCAGAGCTGGCATATTGGAGTCCGTGTCAAGACCTCCAAGAAACTCGTTGCTTTCATCA 507
|||||||||||||||||||||| || | |||||| || ||||||||||||||||||||||
Sbjct 697 ACCAGAGCTGGCATATTGGAGTTCGAGCCAAGACTTCGAAGAAACTCGTTGCTTTCATCA 756
Query 508 GTGGCGTGCCATCAAGAATCAGGGTGCGTGCTGAGGTT-TTGAAAATGCCAAAGATCAAT 566
| ||||||||| |||||||||||||||||| ||||||| || |||||| || ||||||||
Sbjct 757 GCGGCGTGCCAGCAAGAATCAGGGTGCGTGATGAGGTTGTT-AAAATGGCAGAGATCAAT 815
Query 567 CTCTTGTGTGTTCACAAGAAGAACCTCAGGTCTAAG-GGACTTGCTCCTGTCTTGATCAA 625
|||||||||||||||||||| | ||||||||||| || || ||||||||| |||||||
Sbjct 816 TTCTTGTGTGTTCACAAGAAG--C-TCAGGTCTAAGAGG-CTCGCTCCTGTCATGATCAA 871
Query 626 GGAGCTGACTAGAAGGGTTCACTTGCAGAATATATGGCAGGCGGCTTATACCT-CACTTG 684
|||| |||||||||||||||||||| |||| |||||||| || |||||||| | || |
Sbjct 872 GGAGGTGACTAGAAGGGTTCACTTGGAGAACATATGGCAAGCAGCTTATAC-TGCAGGAG 930
Query 685 ATGTACTTCCTACACCAGTCACCACCTGCCAATACTGGGTCAGAATG-TTGAAACCTAAG 743
| | |||||||||||| |||||||||| ||||||||| ||| | ||||| || |||
Sbjct 931 TTATCCTTCCTACACCAATCACCACCTGTCAATACTGGCACAGG-TCATTGAACCCGAAG 989
Query 744 AAGCTAATCGATGTTGGATATTCAACACTTCGTGAAAGAATGACACTGAGCATGA-CCGT 802
|||||||| |||||||| | ||||| ||| ||| ||||||||| |||||| || || |
Sbjct 990 AAGCTAATTGATGTTGGGTTTTCAAGGCTTGGTGCGAGAATGACAATGAGCA-GAACCAT 1048
Query 803 CAAACTTTACAAGCTACCTGATGCACCGATCACTCCTGGATTCAGGGAAATGGA-CCGAC 861
|||||| |||||| |||| ||||||||||||||||||||||||||| ||||||| || ||
Sbjct 1049 CAAACTCTACAAGTTACCAGATGCACCGATCACTCCTGGATTCAGGAAAATGGAACC-AC 1107
Query 862 GTGATGTCCCTGCTGTTACAAAGTTGCTCAGGAACTACCTCCGCCAGTTTGGAGTTGCGA 921
| |||||||||||||||||| |||||| |||||||||||| ||||||||||||| ||||
Sbjct 1108 GCGATGTCCCTGCTGTTACACGGTTGCTTAGGAACTACCTCAGCCAGTTTGGAGTCGCGA 1167
Query 922 CGGACTTTGGTGAAAAGGACGTCGAGCACTGGCTTCTCCCAAGAAAAGATGTCGTCCACA 981
| ||||||| ||| || || |||||||| ||||| ||||||||| |||||||||| |||
Sbjct 1168 CTGACTTTGATGAGAATGATGTCGAGCATTGGCTACTCCCAAGAGAAGATGTCGTGGACA 1227
Query 982 GTTACTTAGTAGAA-G-----AAACTCATGACGTGATCACTGACTTTTGCAGCTTCTACA 1035
||||| |||||||| | ||||||| || || |||||||||| |||||||||||||
Sbjct 1228 GTTACCTAGTAGAAAGCCCTGAAACTCACGA--TG-TCACTGACTTCTGCAGCTTCTACA 1284
Query 1036 CTGTCCCTTTAACTATCGTCGGTAACCCGAAATACAAAACAGTGGAATG-TGCTTATTCT 1094
|| |||||| ||| ||| ||||||||||||| |||| ||| || || | ||| ||||||
Sbjct 1285 CTCTCCCTTCAACCATCCTCGGTAACCCGAACTACACTACATTGAAA-GCTGCGTATTCT 1343
Query 1095 TACTATAATGTCGCGACTA-AGACCTCCTTTCCCCAGCTGATGAATGATGCGCTAATCAT 1153
||||| ||||| || || | ||||||| |||| ||||||||||||||||||||||| |
Sbjct 1344 TACTACAATGTGGCCAC-ACAGACCTCGTTTCTTCAGCTGATGAATGATGCGCTAATTGT 1402
Query 1154 CTCTAAGCAAAAAGGTTTCGATGTGTTCTACGCGTTGGATGTTATGCACAATGAGAGTTT 1213
||| |||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1403 CTCAAAGCAAAAGGGTTTCGATGTGTTCAACGCGTTGGATGTGATGCACAATGAGAGTTT 1462
Query 1214 CTTAAAAGAGTTGAAGTTTGATCAAGGAGATGGACAGA-TGCACTACTATCTCTATAATT 1272
||| ||||| ||||||||| | |||||||||||| | | || ||||||||||| ||||
Sbjct 1463 CTTGAAAGAACTGAAGTTTGGGCCAGGAGATGGACA-ACTTCATTACTATCTCTACAATT 1521
Query 1273 ACCGTTTGAGAAGTGCATTGAAGCCATCAGAACTTGGGCTCGTTCT-TTGGTAAGCT 1328
||||||||| |||||| ||||||||| | ||||| ||||| ||||| || ||||||
Sbjct 1522 ACCGTTTGAAAAGTGCCTTGAAGCCAGCGGAACTCGGGCTTGTTCTCTTA-TAAGCT 1577
> AT2G44175.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily
protein | chr2:18268788-18269214 FORWARD LENGTH=348
Length=348
Score = 65.8 bits (35), Expect = 1e-09
Identities = 39/41 (95%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 24 ATGGAGCCGTCTGATGTCAATGCCTATGATAGAGCTGCGGA 64
||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGAAGCCGTCTGATGTCAATGCCTATGATAGAGCTGAGGA 41
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66264719400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5