BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935404
Length=481
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44650.1 | Symbols: CHL-CPN10, CPN10 | chloroplast chaperoni... 737 0.0
> AT2G44650.1 | Symbols: CHL-CPN10, CPN10 | chloroplast chaperonin
10 | chr2:18419370-18421110 REVERSE LENGTH=1171
Length=1171
Score = 737 bits (399), Expect = 0.0
Identities = 453/479 (95%), Gaps = 3/479 (1%)
Strand=Plus/Plus
Query 1 GGAGGAAGAAGAAGATCTGCTTCTGCAAAAAACCTTATCCTGCTATGGCCTCCACTTTCG 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 557 GGAGGAAGAAGAAGATCTGCTTCTGCAAAAAACCTTATCCTGCTATGGCTTCCACTTTCG 616
Query 61 --T-CTCTCTACCCAATCCTTTCTTTGCCTTTCCGGTCAAAACCACTACTCCTTCTACAG 117
| ||||||||| |||||||||||||| |||||||||||| | ||||||||||| || |
Sbjct 617 TCTGCTCTCTACCAAATCCTTTCTTTGCTTTTCCGGTCAAAGCAACTACTCCTTCGACGG 676
Query 118 CTAACCATAAGCTTCTCGGAAGTCGAAGAGGTTGTCTTAGAATCAAAGCGATTTCCACTA 177
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 CTAACCATACGCTTCTCGGAAGTCGAAGAGGTTGTCTTAGAATCAAAGCGATTTCCACTA 736
Query 178 AATGGGAACCGACAAAGGTTGTTCCTCAGGGAGACAGAGTTCTTGTTCGTCTTGAAGATC 237
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 737 AATGGGAACCGACAAAGGTTGTTCCTCAGGCAGACAGAGTTCTTGTTCGTCTTGAAGATC 796
Query 238 TTCCTATGAAATCGTCGGGTGGAGTATTGTTGCCTAAAGCAGCTGTGAAGTTTGAGAGGT 297
||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 797 TTCCTATTAAATCCTCAGGTGGAGTATTGTTGCCTAAAGCAGCTGTGAAGTTTGAGAGAT 856
Query 298 ACTTAACAGGAGAGGTTATCTCTGTTGGTTCTGAGGTTGGACAACAAGTTGGTCCTGGAA 357
|| ||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 857 ACCTAACAGGAGAGATTATATCTGTTGGTTCTGAGGTTGGACAACAAGTTGGACCTGGAA 916
Query 358 AGAAGGTTCTCTTCTCTGACGTGAGCGCTTATGAGGTCGATTTGGGAACCGATGCTAGAC 417
||| |||| | |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 917 AGAGGGTTTTGTTCTCTGATGTGAGCGCTTATGAGGTCGATTTGGGAACCGATGCTAGGC 976
Query 418 ATTGCTTCTGCAAAGAGAGTGACTTGTTGGCCCTCGTTGAGTGAAGTCTTGTCCAAGAG 476
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 ATTGCTTCTGTAAAGAGAGTGACTTGTTGGCCCTCGTTGAGTGAAGTCTTGTCCAAGAG 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22906771032
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5