BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935405
Length=1565
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44660.1 | Symbols: | ALG6, ALG8 glycosyltransferase family... 2294 0.0
AT2G44650.1 | Symbols: CHL-CPN10, CPN10 | chloroplast chaperoni... 370 2e-101
> AT2G44660.1 | Symbols: | ALG6, ALG8 glycosyltransferase family
| chr2:18420832-18422839 REVERSE LENGTH=1533
Length=1533
Score = 2294 bits (1242), Expect = 0.0
Identities = 1444/1541 (94%), Gaps = 16/1541 (1%)
Strand=Plus/Plus
Query 13 ATCGGTGCCGAGATGGATCACCGGGAAAACAATGACCGGCGACTTCTGCTATGGTTCTTC 72
||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||
Sbjct 1 ATCGGTGCCGAGATGGATCACCGGGAAAAGAGTGACCGGCGACTACTGCTATGGTTCTTC 60
Query 73 GCCGTAGCTACCACCGTGAAACTTCTTCTCATCCCATCCTACAGAAGCACCGATTTCGAG 132
|||||||| ||| |||| ||||| |||||||| || || | |||||||||||||||||||
Sbjct 61 GCCGTAGCCACCGCCGTAAAACTCCTTCTCATTCCGTCGTCCAGAAGCACCGATTTCGAG 120
Query 133 GTTCACCGTAACTGGCTCGCTATCACAAACTCTCTTCCTCTTACCAAATGGTACTTCGAC 192
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTCCACCGTAACTGGCTCGCTATCACAAACTCTCTTCCTCTTACCAAATGGTACTTCGAC 180
Query 193 GAGACTAGCCAATGGACACTCGATTATCCTCCGTTCTTCGCCTACTTCGAACGCTTCCTC 252
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 181 GAGACTAGCCAATGGACACTCGACTATCCTCCTTTCTTCGCCTACTTCGAACGCTTCCTC 240
Query 253 TCAATTTTCGCGCGTCTCATTGATCCCAGAATTGTAGATCTTCAATCAGGACTCGATTAC 312
|||||||||||||||||| | |||||||| || |||||||||||||||||||||||||||
Sbjct 241 TCAATTTTCGCGCGTCTCGTCGATCCCAGGATCGTAGATCTTCAATCAGGACTCGATTAC 300
Query 313 AGCT-CCGAATCTGTAATTTACTTCCAACGGATCAGCGTAATCGTCTCGGATCTATGTCT 371
| | ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 301 A-ATGCCGAATCTGTAATTTACTTCCAACGAATCAGCGTAATCGTCTCAGATCTATGTCT 359
Query 372 TCTCTGCGGTGTTTACCGATTGACTCGAAAATTGGAACCGATGAAGCGAAATCTGATCTG 431
||||| ||||||||| ||||||||||||||||| |||||| |||| ||||||||||||||
Sbjct 360 TCTCTACGGTGTTTATCGATTGACTCGAAAATTAGAACCGTTGAAACGAAATCTGATCTG 419
Query 432 CGCATTGGTGATTTGGTCTCCGGGGCTATTGATCGTAGATCACATTCATTTTCAGTATAA 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGCATTGGTGATTTGGTCTCCGGGGCTATTGATCGTAGATCACATTCATTTTCAGTATAA 479
Query 492 TGGATTTCTACTGGGTTGGTTATTGCTTTCGATTTCGTTTCTTCAAGAAGGGAGAGATCT 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGGATTTCTACTGGGTTGGTTATTGCTTTCGATTTCGTTTCTTCAAGAAGGGAGAGATCT 539
Query 552 GTTGGGTGGGTTTTTATTCGCCGTTCTTCTATGCTTTAAGCATTTGTTCGCCGTCGCTGC 611
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 540 TTTGGGTGGGTTTTTATTCGCAGTTCTTCTATGCTTTAAGCATTTGTTCGCCGTCACTGC 599
Query 612 TCCGGTTTACTTTGTTTATTTACTTAGGCATTATTGCTGGTCCGGTTTAGTTACCGGTTT 671
||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||
Sbjct 600 TCCGGTTTACTTTGTTTATCTACTTAGGCATTATTGCTGGTCTGGTTTAGTTACTGGTTT 659
Query 672 CCGACGGCTTGTAACTATTGGTGCGGTGGTTGTGGCGGTTTTTGCTGCTGCTTATGGACC 731
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 660 CCGACGGCTTGTAACTATTGGTGCGGTGGTTGTGGCGGTTTTTGCTGCTGCCTATGGACC 719
Query 732 CTTTATCTATCATGGACAGATACTGCAAGTCATCAGTCGAATGTTTCCTTTTGGGAGAGG 791
|||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||
Sbjct 720 TTTTATCTATCATGGACAGATACAGCAAGTCATCAGTAGAATGTTTCCTTTCGGGAGAGG 779
Query 792 ATTGTGCCATGCCTACTGGGCACCTAATTTTTGGGTTTTCTATATAATACTTGACAAAGG 851
|||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 780 ATTGTGTCATGCATACTGGGCACCTAATTTTTGGGTTTTCTACATAATACTCGACAAAGG 839
Query 852 GCTTGCCTTTTTGCTGCGAAAGCTCGGATTTGAAATTCAGATTCCTTCCGCATCTTTCAC 911
|||||| |||||||||| ||||| |||| ||||||||| ||||||||||||||||||||
Sbjct 840 GCTTGCGGTTTTGCTGCGGAAGCTAGGATATGAAATTCAAATTCCTTCCGCATCTTTCAC 899
Query 912 TGGAGGATTAGTTGGAGATTCTTCGCCTTTTGCAGTTCTTCCTCAGATCACCCCATTGAC 971
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 900 TGGAGGATTAGTTGGAGATTCTTCGCCTTTTGCAGTTCTTCCTCAGATCACGCCATTGAC 959
Query 972 AACATTTGCAATGGTATTACTTGCTATATCTCCATGTCTCATCAAAGCCTGGAAAAAACC 1031
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 960 AACATTTGCAATGGTATTACTAGCTATATCTCCATGTCTCATCAAAGCCTGGAAAAAACC 1019
Query 1032 GCACCCTGGGCAT-GTTGCTAGATGGATAGCTTATGCATATACATGCGGTTTTCTGTTTG 1090
||| | |||| | |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1020 ACACTCGGGGC-TCGTTGCTAGATGGGTAGCTTATGCATATACATGCGGTTTTCTGTTTG 1078
Query 1091 GATGGCACGTCCATGAGAAAGCATCGCTTCA-TTTCACCATCCCACTTGCAATCGTTGCA 1149
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1079 GATGGCACGTCCATGAGAAAGCATCGCTTCACTTT-ACCATCCCACTTGCAATCGTTGCA 1137
Query 1150 GTGCAGAGTCTAGAAGATGCTAAACATTACTTTCTGGTTTCTATAGTTTCTTGCTATTCG 1209
|| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1138 GTTCAGAGTCTAGAAGATGCTAAACATTACTTTCTGGTTTCCATAGTCTCTTGCTATTCG 1197
Query 1210 CTCT-TCCCACTCTTATATGAGCCGCAGGAATACTCGATCAAGGTTCTGTTGCTGTTACT 1268
|||| ||| |||||||||||| |||||||| ||| ||||||||||||||||||||||| |
Sbjct 1198 CTCTATCC-ACTCTTATATGAACCGCAGGAGTACCCGATCAAGGTTCTGTTGCTGTTATT 1256
Query 1269 GCATTCCATGGTAATGTGGCTTGGCTTTGTGGCTCAGTACACAAACAATAATAAGGTTCA 1328
||||||| ||||||||||||| ||||||| ||||| |||||| | || ||||| ||
Sbjct 1257 GCATTCCGTGGTAATGTGGCTCGGCTTTGCAGCTCAATACACAGAT--TA-TAAGGCGCA 1313
Query 1329 GAAGGAG-A-A-TAGAGTAAGCAAGAGCAAGTTTAGGATTGGATGTTTTGAGAAGAGCTA 1385
|||| || | | ||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 1314 GAAGAAGGAGACTAGTGAAATCAAGAGCAAGTTTAGGATTGGATGTTTTGAGAAGAGCTA 1373
Query 1386 TCTAATGGGTTT-AGTTATAGTAGAGATAGTGTCTCAGTTCTTGCATCCATATTATCTAG 1444
|||||||||||| | |||||||||||||||||||||| ||||||||||| |||| |||||
Sbjct 1374 TCTAATGGGTTTGA-TTATAGTAGAGATAGTGTCTCAATTCTTGCATCCGTATTTTCTAG 1432
Query 1445 GTGATAAATTTCCATTTTTGCCGTTAATGTTGATCTCAACATATTGTACCATTGGTACTA 1504
||||||| || ||||||||||| ||||||||||||||||||||||||||| |||||| ||
Sbjct 1433 GTGATAAGTTGCCATTTTTGCCTTTAATGTTGATCTCAACATATTGTACCGTTGGTATTA 1492
Query 1505 TGTACTCTTGGATTTGGCAGCTCCGGAAGATCCTGACATGA 1545
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 TGTACTCTTGGATTTGGCAGCTCCGGAAGATCCTGACATGA 1533
> AT2G44650.1 | Symbols: CHL-CPN10, CPN10 | chloroplast chaperonin
10 | chr2:18419370-18421110 REVERSE LENGTH=1171
Length=1171
Score = 370 bits (200), Expect = 2e-101
Identities = 262/291 (90%), Gaps = 8/291 (3%)
Strand=Plus/Plus
Query 1268 TGCATTCCATGGTAATGTGGCTTGGCTTTGTGGCTCAGTACACAAACAATAATAAGGTTC 1327
|||||||| ||||||||||||| ||||||| ||||| ||||| | || |||||| |
Sbjct 2 TGCATTCCGTGGTAATGTGGCTCGGCTTTGCAGCTCAATACAC--A-GATTATAAGGCGC 58
Query 1328 ---AGAAGGAGAATAGAGTAAGCAAGAGCAAGTTTAGGATTGGATGTTTTGAGAAGAGCT 1384
||||||||| ||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 59 AGAAGAAGGAGACTAGTGAAATCAAGAGCAAGTTTAGGATTGGATGTTTTGAGAAGAGCT 118
Query 1385 ATCTAATGGGTTTAG-TTATAGTAGAGATAGTGTCTCAGTTCTTGCATCCATATTATCTA 1443
||||||||||||| | |||||||||||||||||||||| ||||||||||| |||| ||||
Sbjct 119 ATCTAATGGGTTT-GATTATAGTAGAGATAGTGTCTCAATTCTTGCATCCGTATTTTCTA 177
Query 1444 GGTGATAAATTTCCATTTTTGCCGTTAATGTTGATCTCAACATATTGTACCATTGGTACT 1503
|||||||| || ||||||||||| ||||||||||||||||||||||||||| |||||| |
Sbjct 178 GGTGATAAGTTGCCATTTTTGCCTTTAATGTTGATCTCAACATATTGTACCGTTGGTATT 237
Query 1504 ATGTACTCTTGGATTTGGCAGCTCCGGAAGATCCTGACATGACATATAGAT 1554
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 ATGTACTCTTGGATTTGGCAGCTCCGGAAGATCCTGACATGACATATAGAT 288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77258638755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5