BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935409
Length=292
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45410.1 | Symbols: LBD19 | LOB domain-containing protein 19... 355 1e-97
> AT2G45410.1 | Symbols: LBD19 | LOB domain-containing protein
19 | chr2:18712287-18713116 REVERSE LENGTH=746
Length=746
Score = 355 bits (192), Expect = 1e-97
Identities = 224/240 (93%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 35 GAGGAGAAAGTGTGTGAAAGGGTGCATTTTCGCTCCTTGTTTCGATCCAGAGCAAGGAAC 94
||| ||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||
Sbjct 77 GAGAAGAAAGTGTGTGAAAGGGTGCGTTTTCGCTCCTTATTTCGATGCAGAGCAAGGAAC 136
Query 95 TGCGAGATTTGCAGCAGTTCACAAAGTATTTGGAGCCAGTAATGCCTCTATGATATTACT 154
||||||||||||||||||||||||||||||||| ||||| |||||||||| ||| |||||
Sbjct 137 TGCGAGATTTGCAGCAGTTCACAAAGTATTTGGGGCCAGCAATGCCTCTAAGATGTTACT 196
Query 155 GAGATTGCCTTTGCACAAGCGACTTGATGCAGTCGTCACCCTCTGTTACGAGGCCATGGC 214
|||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 197 GAGATTGCCTCTGCACAAGAGACTTGATGCAGTCGTCACGCTCTGTTACGAGGCCATGGC 256
Query 215 AAGGCTTCGTGGTCCTGTCTATGGCTCTGTTGGCCATCTCTTCCCTCCTCAACACTAGGT 274
|||| |||||| ||||||||||||||||||||||||||||||| ||| ||||||| ||||
Sbjct 257 AAGGATTCGTGATCCTGTCTATGGCTCTGTTGGCCATCTCTTCTCTCTTCAACACCAGGT 316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13471756732
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5