BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935420

Length=217
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G02880.3 | Symbols: TPK1 | thiamin pyrophosphokinase1 | chr1...   239    9e-63
  AT2G44750.2 | Symbols: TPK2 | thiamin pyrophosphokinase 2 | chr...   231    1e-60


> AT1G02880.3 | Symbols: TPK1 | thiamin pyrophosphokinase1 | chr1:642752-644539 
REVERSE LENGTH=1169
Length=1169

 Score =  239 bits (129),  Expect = 9e-63
 Identities = 141/147 (96%), Gaps = 0/147 (0%)
 Strand=Plus/Plus

Query  52   GCAGCACTGAGATGAGATTTGGTGGGTTGATAAGTACATCGAACTTGGTAAAAGAAGAGA  111
            ||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct  713  GCAACACTGAGATGAGATTTGGTGGGTTGATAAGTACATCCAACTTGGTTAAAGAAGAGA  772

Query  112  AAATCATAGTCGAATCGGATTCGGATCTTCTCTGGACTATATCCATCAAGAAAACAGGAA  171
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  773  AAATCACAGTCGAATCGGATTCGGATCTTCTCTGGACTATATCCATCAAGAAAACAGGAC  832

Query  172  TTTCCGTACAAGACCATACACCTTAGG  198
            ||||| |||||||||||||||||||||
Sbjct  833  TTTCCATACAAGACCATACACCTTAGG  859


> AT2G44750.2 | Symbols: TPK2 | thiamin pyrophosphokinase 2 | chr2:18451426-18452875 
FORWARD LENGTH=1009
Length=1009

 Score =  231 bits (125),  Expect = 1e-60
 Identities = 155/169 (92%), Gaps = 4/169 (2%)
 Strand=Plus/Plus

Query  52   GCAGCACTGAGATGAGATTTGGTGGGTTGATAAGTACATCGAACTTGGTAAAAGAAGAGA  111
            ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  743  GCAACACTGAGATGAGATTTGGTGGGTTGATAAGTACATCGAACTTGGTTAAAGAAGAGA  802

Query  112  AAATCATAGTCGAATCGGATTCGGATCTTCTCTGGACTATATCCATCAAGAAAACAGGAA  171
             ||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||| 
Sbjct  803  TAATCACAGTCGAATCGGATTCGGATCTTCTCTGGACTATTTCCATCAAGAAGACAGGAC  862

Query  172  TTTCC-GTACAAGACCATACACCTTAGGGGCGACACT-TT-AGTTTTAT  217
            || || ||||||||||||| ||||||| |||| |||| || ||||||||
Sbjct  863  TT-CCTGTACAAGACCATAAACCTTAGTGGCGCCACTCTTTAGTTTTAT  910



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9701675557


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5