BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935434
Length=763
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44840.1 | Symbols: ATERF13, EREBP, ERF13 | ethylene-respons... 1059 0.0
AT4G17490.1 | Symbols: ATERF6, ERF-6-6, ERF6 | ethylene respons... 99.0 6e-20
> AT2G44840.1 | Symbols: ATERF13, EREBP, ERF13 | ethylene-responsive
element binding factor 13 | chr2:18495341-18496272 FORWARD
LENGTH=932
Length=932
Score = 1059 bits (573), Expect = 0.0
Identities = 666/707 (94%), Gaps = 21/707 (3%)
Strand=Plus/Plus
Query 51 AGCTCATCTGATTCCGTTAATAACGGCGTTAACTCACGGATGTTCTTCCGTAACCCGAGT 110
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 103 AGCTCATCTGATTCCGTTAATAACGGCGTTAACTCACGGATGTACTTCCGTAACCCGAGT 162
Query 111 TTCAGCAACGTTATCTTAAACGATAACTGGAGTGATTTGCCGTTAAGTGTCGACGATTCT 170
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 163 TTCAGCAACGTTATCTTAAACGATAACTGGAGCGACTTGCCGTTAAGTGTCGACGATTCT 222
Query 171 CAAGACATGGCTATTTACAACACTCTCCGTGACGCCGTTAGCTCCGGATGGACACCCTCC 230
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 223 CAAGACATGGCTATTTACAACACTCTCCGTGATGCCGTTAGCTCCGGCTGGACACCCTCC 282
Query 231 GTTCCTCCCGTTACCTCTCCGGCGGAGGAAGTTTCCGTTCGAGGAGAAGAGAAGCCTCCA 290
|||||||||||||||||| | | | | || ||||| || | ||||||||
Sbjct 283 GTTCCTCCCGTTACCTCT-C--C----G--G----CG---GAGGA-AA-ATAAGCCTCCG 324
Query 291 GCGAC---GGCGAGTGGCTCGCACGCGCCGAGGCAGAAGGGGATGCAGTACAGAGGAGTG 347
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 325 GCGACGAAGGCGAGTGGCTCACACGCGCCGAGGCAGAAGGGGATGCAGTACAGAGGAGTG 384
Query 348 AGGAGGAGGCCGTGGGGGAAATTCGCGGCGGAGATTAGGGATCCGAAGAAGAACGGAGCT 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 AGGAGGAGGCCGTGGGGGAAATTCGCGGCGGAGATTAGGGATCCGAAGAAGAACGGAGCT 444
Query 408 AGGGTTTGGCTCGGGACTTACGAGACGCCGGAAGACGCGGCGGTGGCTTACGACCGAGCG 467
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 445 AGGGTTTGGCTCGGGACTTACGAGACGCCGGAGGACGCGGCGGTGGCGTACGACCGAGCG 504
Query 468 GCGTTTCAGCTTAGAGGATCGAAAGCTAAGCTGAATTTTCCGCATTTGATTGGTTCTTGT 527
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 GCGTTTCAGCTCAGAGGATCGAAAGCTAAGCTGAATTTTCCGCATTTGATTGGTTCTTGT 564
Query 528 AAGTATGAGCCGGTTAGGATTAGGCCTCGCCGTCGTTCGCCGGAACCGTCAGTCTCCAAT 587
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 565 AAGTATGAGCCGGTTAGGATTAGGCCTCGCCGTCGCTCGCCGGAACCGTCAGTCTCCGAT 624
Query 588 CAGTTAACATCGGAGCAAAAGAGAGAAAGCCACGTGGATGACGGCGAGTCTATTTTGGTT 647
|||||||| |||||||| ||||| |||||||||||||||||||||||||||| |||||||
Sbjct 625 CAGTTAACGTCGGAGCAGAAGAGGGAAAGCCACGTGGATGACGGCGAGTCTAGTTTGGTT 684
Query 648 GTACCGGAGTTGGATTTCACGGTGGATCAGTTTTACTTCGATGGTAGTTTATTAATGGAT 707
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 GTACCGGAGTTGGATTTCACGGTGGATCAGTTTTACTTCGATGGTAGTTTATTAATGGAC 744
Query 708 CAATCAGAATGTTCTTATTCTGGTAATCGGACATAATTAGTTTTAAG 754
|||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 745 CAATCAGAATGTTCTTATTCTGATAATCGGATATAATTAGTTTTAAG 791
> AT4G17490.1 | Symbols: ATERF6, ERF-6-6, ERF6 | ethylene responsive
element binding factor 6 | chr4:9752824-9753867 REVERSE
LENGTH=1044
Length=1044
Score = 99.0 bits (53), Expect = 6e-20
Identities = 145/187 (78%), Gaps = 16/187 (9%)
Strand=Plus/Plus
Query 332 GCAGTACAGAGGAGTGAGGAGGAGGCCGTGGGGGAAATTCGCGGCGGAGATTAGGGATCC 391
||| |||||||||||||||| ||||||||||||||||||||||||||||||| | || ||
Sbjct 451 GCATTACAGAGGAGTGAGGATGAGGCCGTGGGGGAAATTCGCGGCGGAGATTCGAGACCC 510
Query 392 GAAGAAGAACG-G-AGCTAGGGTTTGGCTCGGGAC-TTACGAGACGCCGGAA-GACGCGG 447
|| | || | | || | |||||||||||||| || |||||| || | || ||||
Sbjct 511 GACTC-GT-CGTGGAACTCGTGTTTGGCTCGGGACGTTT-GAGACGGCG-ATCGAAGCGG 566
Query 448 CG-GTGGCTTACGACCGAGCGGCGTTTCAG-CTTA-GAGGATCGAAAG-CTAAGCTGAAT 503
| | | |||||||| || |||||| || || | ||||||| |||| | | ||||||
Sbjct 567 CTAGAG-CTTACGACAAAGAAGCGTTT-AGACT-ACGAGGATC-AAAGGCGATTCTGAAT 622
Query 504 TTTCCGC 510
|| ||||
Sbjct 623 TTCCCGC 629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37072800486
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5