BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935435
Length=430
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33610.1 | Symbols: | glycine-rich protein | chr4:16146261-... 451 2e-126
AT1G55990.1 | Symbols: | glycine-rich protein | chr1:20942487-... 185 2e-46
> AT4G33610.1 | Symbols: | glycine-rich protein | chr4:16146261-16146993
FORWARD LENGTH=733
Length=733
Score = 451 bits (244), Expect = 2e-126
Identities = 319/356 (90%), Gaps = 1/356 (0%)
Strand=Plus/Minus
Query 17 CAAAATGGCATCATACAAGCTCTTTCTCATTGCTTTTTTAGTGAGTCTCTCTTCCTCCAC 76
|||||||||||||||||||||||| | |||||||||| ||||| | ||||||||||| |
Sbjct 678 CAAAATGGCATCATACAAGCTCTTCCGCATTGCTTTTCTAGTGTGCCTCTCTTCCTCTAT 619
Query 77 CATGATCAACACTTGCTCGGCCTCACGTAAACTTCTTCAGCAACAGCCTCTTCCTCAAAT 136
||||||||||||||||| |||||||| ||||| || ||||| ||||||||||||||
Sbjct 618 GATGATCAACACTTGCTCAGCCTCACGCCGCCTTCTCCAACAACAACCTCTTCCTCAAAT 559
Query 137 TCCAAATCTGCCTATCCCGACAATGGGACTACCTCCATTGCCATCAACTTTGCCACAACC 196
|||||||||||||| || |||||||||||||||||||||||||| || |||||||||||
Sbjct 558 CCCAAATCTGCCTATTCCAACAATGGGACTACCTCCATTGCCATCGACGTTGCCACAACC 499
Query 197 ATCTCTACCAACTCTTCCCACAATGCCCACTGTAATGTCTCCATTTCCAATGCCATCAAC 256
||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 498 GTCTTTACCAACTCTCCCCACAATGCCCACTGCAATGTCTCCATTTCCAATGCCATCAGC 439
Query 257 TTTGCCACAACCAAACCTTCCCACAATTCCCACTACAATGCCTCCAATGCCAACTTTGCC 316
||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct 438 TTTGCCACAACCAAATCTTCCCACCATTCCCACGGCAATGCCTCCAATGCCAACTTTGCC 379
Query 317 TTCACTTCCGACAATAATTTCTTCTCTTCCGACTAATCTCCCATCCATTCCGTTCT 372
|||| |||| |||| |||| ||||||||||||||||| | ||||||||||| ||||
Sbjct 378 TTCATTTCCAACAACAATTCCTTCTCTTCCGACTAATATTCCATCCATTCC-TTCT 324
> AT1G55990.1 | Symbols: | glycine-rich protein | chr1:20942487-20942951
REVERSE LENGTH=420
Length=420
Score = 185 bits (100), Expect = 2e-46
Identities = 174/206 (84%), Gaps = 19/206 (9%)
Strand=Plus/Minus
Query 167 ACCTCCATTGCCATCAACTTTGCCACAACCATCTCTACCAACTCTTCCCACAATGCCCAC 226
||||||||||||||| || ||||||||||||||| |||| | |||||||||||
Sbjct 294 ACCTCCATTGCCATCGACGTTGCCACAACCATCTTTACC-A--------ACAATGCCCAC 244
Query 227 TGTAATGTCTCCATTTCCAATGCCATCAACTTTGCCACAACCAAACCTTCCCACAATTCC 286
|| ||||||||||||||||||||||||| |||||||||||||||| |||||||| ||| |
Sbjct 243 TGCAATGTCTCCATTTCCAATGCCATCAGCTTTGCCACAACCAAATCTTCCCACCATT-C 185
Query 287 CACTACAATGCCTCCAATGCCAACTTTGCCTTCACTTCCGACAATAATTTCTTCTCTTCC 346
| | || | |||||||||||||||||||| |||| || | |||| ||||||||||
Sbjct 184 C-C-AC---G---GCAATGCCAACTTTGCCTTCATTTCCAACTACAATTCCTTCTCTTCC 133
Query 347 GACTAATCTCCCATCCATTCCGTTCT 372
||||||||||||||||||||| ||||
Sbjct 132 GACTAATCTCCCATCCATTCC-TTCT 108
Score = 134 bits (72), Expect = 9e-31
Identities = 109/127 (86%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 1 GATTCATTAACACACCCAAAATGGCATCATACAAGCTCTTTCTCATTGCTTTTTTAGTGA 60
|||| || |||||| |||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 415 GATTTATCAACACATCCAAGATGGCATCATACAAGCTCTTTCTCATTGCTTTCTTAGTGA 356
Query 61 GTC-TCTCTTCCTCCACCATGATCAACACTTGCTCGGCCTCACGTAAACTTCTTCAGCAA 119
| | |||||||||| | ||||||||||||||||| |||||||| ||||| || |||
Sbjct 355 G-CGTCTCTTCCTCAATGATGATCAACACTTGCTCAGCCTCACGCCGCCTTCTCCAACAA 297
Query 120 CAGCCTC 126
|| ||||
Sbjct 296 CAACCTC 290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20408706094
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5