BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935453
Length=961
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45050.1 | Symbols: GATA2 | GATA transcription factor 2 | ch... 1493 0.0
> AT2G45050.1 | Symbols: GATA2 | GATA transcription factor 2 |
chr2:18582872-18584083 FORWARD LENGTH=1119
Length=1119
Score = 1493 bits (808), Expect = 0.0
Identities = 933/988 (94%), Gaps = 30/988 (3%)
Strand=Plus/Plus
Query 2 TCAACCATAATCTATAACAATGGACGTTTATGGCTTATCTTCACCAGACTTACTTCGAAT 61
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 68 TCAATCATAATCTATAACAATGGACGTCTATGGCTTATCTTCACCAGACTTACTTCGAAT 127
Query 62 CGACGACCTTCTTGATTTCTCCAACGAAGACATCTTCTCCGCCTCTTCTTCCGGTGGTTC 121
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 128 CGACGACCTTCTTGATTTCTCCAACGAAGACATCTTCTCCGCTTCTTCTTCCGGTGGTTC 187
Query 122 CACCGCCGCTACTTCCTCTTCTTCTTTCCCTCCTCCTCAAAACCCTAATTTCCACCACCA 181
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 188 CACCGCCGCTACTTCCTCTTCTTCTTTCCCTCCTCCTCAAAACCCTAGTTTCCACCACCA 247
Query 182 CCATCTCCCTTCCTCCGCCGATCATCACTCCTTCCTCCACGACATTTGCGTTCCCAGTGA 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 CCATCTCCCTTCCTCCGCCGATCATCACTCCTTCCTCCACGACATTTGCGTTCCCAGTGA 307
Query 242 TGACGCAGCTCATCTTGAATGGCTTTCGCAATTCGTAGACGATTCTTTCGCTGATTTTCC 301
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 308 TGACGCAGCTCATCTTGAATGGCTTTCGCAATTCGTGGACGATTCTTTCGCTGATTTTCC 367
Query 302 GGCGAATCCATTAGGAGGAACTATGACTTCGGCCAAAACTGAAACTTCATTTCCTGGGAA 361
|||||||||||||||||||||||||||||| | ||||||||||||||| ||||| |||||
Sbjct 368 GGCGAATCCATTAGGAGGAACTATGACTTCTGTCAAAACTGAAACTTCCTTTCCGGGGAA 427
Query 362 ACCAAGAAGCAAACGATCAAGAGCTCCTGCTCTTTTCGCCGGAACATGGTCACAGATGCC 421
|||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||
Sbjct 428 ACCAAGAAGCAAACGATCAAGAGCTCCTGCTCCTTTCGCCGGAACATGGTCTCCGATGCC 487
Query 422 AAC-GGAATCCGAGCATCATCAGCTTCACTCCGCCGCGAAATTCAAGCCAAAGAAAGAAC 480
|| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 488 -ACTGGAATCCGAGCATCAGCAGCTTCACTCCGCCGCCAAATTCAAGCCAAAGAAAGAAC 546
Query 481 -ATTC--C---ggaggaggaggaggaggaagacatcagtcttcgtcatcggagtcggcgg 534
|| | | ||||||||||||||||||||||||||||| |||||||||||| | |||
Sbjct 547 AATCCGGCGGAGGAGGAGGAGGAGGAGGAAGACATCAGTCATCGTCATCGGAGACTACGG 606
Query 535 aaggaggaggaatgaggagATGTACTCACTGTGCATCGGAGAAGACGCCACAATGGAGGA 594
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 607 AAGGAGGAGGAATGAGGAGATGTACTCACTGTGCATCGGAGAAAACGCCACAGTGGAGGA 666
Query 595 CAGGACCACTAGGACCTAAAACGCTATGTAACGCTTGTGGAGTCCGGTTTAAATCCGGTA 654
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 667 CAGGACCACTTGGACCTAAAACACTATGTAACGCTTGTGGAGTCCGGTTTAAATCCGGTA 726
Query 655 GACTTGTACCGGAATATAGACCGGCTTCGAGTCCTACTTTTGTTTTGACTCAGCATTCAA 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 GACTTGTACCGGAATATAGACCGGCTTCGAGTCCTACTTTTGTTTTGACTCAGCATTCAA 786
Query 715 ACTCTCACCGGAAAGTGATGGAGCTTCGACGGCAGAAAGAAGTTATGAGACAACCACAAC 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 ACTCTCACCGGAAAGTGATGGAGCTTCGACGGCAGAAAGAAGTTATGAGACAACCACAAC 846
Query 775 AAGTTCAACTTCATCACCACCACCACCCGTTTTAGTTT-C-C-----ACTGCCTCGTCCG 827
|||||||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct 847 AAGTTCAACTTCATCACCACCACCACCCGTTTTAGTTTTCACTTTTCACTGCCTCGTCCG 906
Query 828 TCGTC--TCttttttttG-----------G-TTCTTGGGGTTGGGTTTTGGGGTAACGTC 873
||||| ||||||||||| | ||||||||||||||||||||| |||||||
Sbjct 907 TCGTCACTCTTTTTTTTGTTTTTCTTTTTGGTTCTTGGGGTTGGGTTTTGGG-TAACGTC 965
Query 874 ACGTGATGATGACGTGTCGCGATCCTAGCGGCGTTAATCACGTGACCGACGACGACGGGA 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 ACGTGATGATGACGTGTCGCGATCCTAGCGGCGTTAATCACGTGACCGACGACGACGGGA 1025
Query 934 GCCTAAAATTTTTAGCGAACGTTGCAAA 961
||||||||||||||| |||||||| |||
Sbjct 1026 GCCTAAAATTTTTAGTGAACGTTGGAAA 1053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47019161592
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5