BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935454
Length=859
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45060.1 | Symbols: | Uncharacterised conserved protein UCP... 1467 0.0
> AT2G45060.1 | Symbols: | Uncharacterised conserved protein UCP022280
| chr2:18584352-18586776 REVERSE LENGTH=1229
Length=1229
Score = 1467 bits (794), Expect = 0.0
Identities = 837/858 (98%), Gaps = 2/858 (0%)
Strand=Plus/Plus
Query 3 TTGGAGAGATCTTTTCTAATGGCAGCCTTGGGAGAATCATCATCCTCAGAGATGGACAAC 62
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 71 TTGGAGAGATCTTTTCTAATGGCAGCGTTGGGAGAATCATCATCCTCAGAGATGGACAAC 130
Query 63 GCG-AATCCGCCGGAGATTCCTCAATCTTCGCCAGTGCACCCGCCGGAGTATCAGAAGAT 121
||| ||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 131 GCGAAAT-CGCCGGAGATTCAACAATCTTCGCCAGTGCATCCGCCGGAGTATCAGAAGAT 189
Query 122 CGCAACGACGACGGTGGAAAATGCGGCTTCCTGGATCGATGATGCGTTGCGTCAGGCGCT 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 CGCAACGACGACGGTGGAAAATGCGGCTTCCTGGATCGATGATGCGTTGCGTCAGGCGCT 249
Query 182 TGTATACCAGAAGACGATCACGGAGACGGTGGATTCTACCATTGACGCCTCCAAAGCTAG 241
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 250 TGTTTACCAGAAGACGATCACGGAGACGGTGGATTCTACCATTGACGCCTCCAAAGCTCG 309
Query 242 ATTGTCTCAGATTCGAGATACTTCTGTAGCTCACACAAGCCAAACCATTGATTCTCTTCG 301
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 310 ATTGTCTCAGATTCGAGATACTTCTGTAGCTCACACGAGCCAAACCATCGATTCTCTTCG 369
Query 302 AGAGATTGCTTCTGAGTATAACGTTTACGAGCAAATGGTGTTTGGGAAAATTAAAGATGG 361
||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 370 AGACATTGCTTCTGAGTATAACGTTTACGAGCAAATGGTGTTTGGGAAGATCAAAGATGG 429
Query 362 TGTGAATGTTGCTGCATCTCATCCGCTAATATCAGGCACCTTAGCTTTTGGAGTTGGGAT 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 TGTGAATGTTGCTGCATCTCATCCGCTAATATCAGGCACCTTAGCTTTTGGAGTTGGGAT 489
Query 422 TTTTGCTCTGAAAAAGACAAGAAGATTTGTATATTACAATACTGTACGCATGTTTGTAAG 481
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 490 TTTTGCTCTGAAAAAGACCAGAAGATTTGTATATTACAATACTGTACGCATGTTTGTTAG 549
Query 482 TGAAGAGGCTTTGCTTTCTAGAGCAGATCTTAAAGTAAAAGAGTTGCGACAATCAATGGA 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 TGAAGAGGCTTTGCTTTCTAGAGCAGATCTTAAAGTAAAAGAGTTGCGACAATCAATGGA 609
Query 542 TCGTCTTAAAGCCGAGAGTGAAAAATTAGAGAGAGTCGCAACTGTGGCAGAAGAGGAATT 601
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 610 TCGTCTTAAAGCCGAGAGTGAAAAGTTAGAGAGAGTTGCAACTGTGGCAGAAGAGGAATT 669
Query 602 GATTAGAGGAAGGATGAAACTCAGGCAAGCAGGCAAACAAATCAGAGGTGCGATCAGCTC 661
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 CATTAGAGGAAGGATGAAACTCAGGCAAGCAGGCAAACAAATCAGAGGTGCGATCAGCTC 729
Query 662 AGCTTATAAGATTGAAAAGCAAGCAGCAGGTTTGAAAGATGTACTAAAAGAACTGCCAAC 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 AGCTTATAAGATTGAAAAGCAAGCAGCAGGTTTGAAAGATGTACTAAAAGAACTGCCAAC 789
Query 722 GAGAGAAGCTTCTCGATTCCGCACTCAAATATCGAACCGTGCTTCTGAAGTGAAGCAAGA 781
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 790 GAGAGAAGCTTCTCGATTCCGCACTCAAATATCGAAGCGTGCTTCTGAAGTGAAGCAAGA 849
Query 782 GAGAAACGCTTTGACAAAGGAAGTGAACAAGATCAGCAACTATGGTATCTCTGTATGAGG 841
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 850 GAGAAACGCTTTGACAAAGGAAGTGAACAAGATCAGCAATTATGGTATCTCCGTATGAGG 909
Query 842 CAAACCAAACCCCATTTT 859
||||||||||||||||||
Sbjct 910 CAAACCAAACCCCATTTT 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41895278598
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5