BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935463

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G45740.1 | Symbols: PEX11D | peroxin 11D | chr2:18839716-188...   520    6e-147


> AT2G45740.1 | Symbols: PEX11D | peroxin 11D | chr2:18839716-18841403 
FORWARD LENGTH=1161
Length=1161

 Score =  520 bits (281),  Expect = 6e-147
 Identities = 321/338 (95%), Gaps = 12/338 (4%)
 Strand=Plus/Plus

Query  32   TATCAAGAGCAGAGCTAGCACTTGTGGTAATGTATATGTATCTGAACAAAGCAGAGGCAA  91
            ||||||||||||||||||||||||||||||||  ||  | | ||||||||||||||||||
Sbjct  169  TATCAAGAGCAGAGCTAGCACTTGTGGTAATG--TA--T-T-TGAACAAAGCAGAGGCAA  222

Query  92   GGGATAAGTTATGCAGAGCTATACTACAGTATGGTTCCAAGTTCTTGAGTGGTGGACAAC  151
            | |||||||||||||||||  || ||||||||||||||||||||||||||||||||||||
Sbjct  223  GAGATAAGTTATGCAGAGC--TA-TACAGTATGGTTCCAAGTTCTTGAGTGGTGGACAAC  279

Query  152  CTGGTACTGCTCAAAATGTTGACAAATCTACTAGCTTAGCCAGAAAAGTCTTTCGTCTTT  211
            |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct  280  CTGGTACTGCTCAAAATGTTGACAAATCTACTAGCTTAGCAAGAAAAGTCTTCCGTCTTT  339

Query  212  TCAAGTTTGTGAATGACTTGCATGGTCTCATCAGTCCTGTGCCTAAAGGGACTCCTCTTC  271
            |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct  340  TCAAGTTTGTGAATGACTTGCATGGTCTTATCAGTCCTGTGCCTAAAGGAACTCCTCTTC  399

Query  272  CTCTTGTTTTACTTGGAAAGTCGAAGAACGCACTTTTATCTACATTCTTGTTCCTGGATC  331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  400  CTCTTGTTTTACTTGGAAAGTCGAAGAACGCACTTTTATCTACATTCTTGTTCCTGGATC  459

Query  332  AAATTGTCTGGCTTGGGAGATCAGGAGGAATATATAAG  369
            ||||||||||||||||||||||||||  | ||||||||
Sbjct  460  AAATTGTCTGGCTTGGGAGATCAGGA--A-TATATAAG  494



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21715667568


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5