BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935464

Length=302
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G45135.1 | Symbols:  | RING/U-box superfamily protein | chr2...   220    5e-57


> AT2G45135.1 | Symbols:  | RING/U-box superfamily protein | chr2:18609191-18610574 
FORWARD LENGTH=816
Length=816

 Score =  220 bits (119),  Expect = 5e-57
 Identities = 157/174 (90%), Gaps = 7/174 (4%)
 Strand=Plus/Plus

Query  82   CAG-AAGA-AGCCTCTTATTGCTATTCAATGCCGTAGATGCTTATCAGACTCTTCTCCGG  139
            ||| |||| | ||| ||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct  241  CAGAAAGATA-CCTATTATTGCTATTGAATGCCGTAGATGCTTATCAGTCTCTTCTCCGG  299

Query  140  TAGTTATCGTCAACCCTTGCGA-CCACAGATTCTGCGTGAAATGTATCTTATTCCTCTGG  198
            ||||||| | | |||||||| |  ||||||||||||||||||||||||||||||||||||
Sbjct  300  TAGTTATTGCCGACCCTTGC-ATGCACAGATTCTGCGTGAAATGTATCTTATTCCTCTGG  358

Query  199  GCACGCCAGAAACAG-AGAGAACCTTGTGTGTGTCCCCTTGATGGAGAAAAGAT  251
            | ||||||||||| | |||||||||||||| || ||||||||||||||||||||
Sbjct  359  GGACGCCAGAAAC-GTAGAGAACCTTGTGTATGCCCCCTTGATGGAGAAAAGAT  411



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13974434222


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5