BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935472
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45190.1 | Symbols: AFO, FIL, YAB1 | Plant-specific transcri... 1487 0.0
> AT2G45190.1 | Symbols: AFO, FIL, YAB1 | Plant-specific transcription
factor YABBY family protein | chr2:18628265-18630712
REVERSE LENGTH=1035
Length=1035
Score = 1487 bits (805), Expect = 0.0
Identities = 840/857 (98%), Gaps = 1/857 (0%)
Strand=Plus/Plus
Query 1 CCCAACAATCAAGAAGATCAGATCATGGTGGGGTTTTTTATTTTCTCCTTATCAAGAATC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 CCCAACAATCAAGAAGATCAGATCATGGTGGGGTTTTTTATTTTCTCCTTATCAAGAATC 66
Query 61 CTCTGATCAGTCAAATACCCATCAATCAATCAAATCCCCAAACACTCCC-AAAAAAGATC 119
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 67 CTCTGATCAGTCAAATACCCATCAATCAATCAAATCCCCAAACACTCCCAAAAAAAGATC 126
Query 120 AGGTTCCAAtttttttCCTCTTCTTACAAAAAAGATGTCTATGTCGTCTATGTCCTCCCC 179
|| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 127 AGCTTCCAATATTTTTCCCCTTCTTACAAAAAAGATGTCTATGTCGTCTATGTCCTCCCC 186
Query 180 TTCCTCAGCTGTTTGTTCACCGGACCACTTCTCTCCTTCCGAGCATCTCTGCTATGTCCA 239
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 187 TTCCTCAGCTGTTTGTTCACCGGACCACTTCTCTCCTTCCGACCATCTCTGCTATGTCCA 246
Query 240 ATGCAACTTTTGCCAAACCATTCTTGCGGTTAGTGTTCCTTACACAAGCTTGTTCAAGAC 299
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 247 ATGCAACTTTTGCCAAACCATCCTTGCGGTTAATGTTCCTTACACAAGCTTGTTCAAGAC 306
Query 300 CGTAACTGTTCGATGTGGTTGCTGTACCAATCTCCTCTCGGTGAACATGAGATCATATGT 359
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 307 CGTAACTGTCCGATGTGGTTGCTGTACCAATCTCCTTTCGGTGAACATGAGATCATATGT 366
Query 360 CCTCCCAGCCTCTAACCAGCTCCAGCTCCAGCTCGGTCCTCACTCTTACTTCAACCCCCA 419
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 367 CCTCCCAGCTTCTAACCAGCTCCAGCTCCAGCTCGGTCCTCACTCTTACTTCAATCCCCA 426
Query 420 GGATATTCTGGAGGAGCTGAGAGATGCACCATCTAACATGAATATGATGATGATGAATCA 479
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 427 GGATATTCTGGAGGAGCTGAGAGATGCACCGTCTAACATGAATATGATGATGATGAATCA 486
Query 480 ACATCCTACTATGAATGACATACCATCTTTCATGGATCTTCATCAACAACATGAGATTCC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 ACATCCTACTATGAATGACATACCATCTTTCATGGATCTTCATCAACAACATGAGATTCC 546
Query 540 TAAAGCACCACCCGTTAACCGCCCTCCAGAGAAAAGACAGAGAGTCCCATCCGCATATAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 TAAAGCACCACCCGTTAACCGCCCTCCAGAGAAAAGACAGAGAGTCCCATCCGCATATAA 606
Query 600 CCGATTCATCAAGGAGGAGATCCAACGTATCAAAGCTGGTAATCCTGATATAAGCCACAG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 CCGATTCATCAAGGAGGAGATCCAACGTATCAAAGCTGGTAATCCTGATATAAGCCACAG 666
Query 660 AGAAGCCTTTAGTGCTGCTGCAAAGAATTGGGCCCACTTCCCCCACATACACTTCGGGCT 719
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGAAGCCTTTAGTGCTGCTGCCAAGAATTGGGCCCACTTCCCCCACATACACTTCGGGCT 726
Query 720 CGTGCCAGACAATCAACCCGTGAAGAAAACCAACATGCCCCAACAGGAGGGAGATGATAA 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 727 CGTGCCAGACAATCAACCCGTGAAGAAAACCAACATGCCCCAACAGGAGGGAGAGGATAA 786
Query 780 CATGGTGATGAAAGAAGGTTTCTACGCTCCTGCGGCTGCTAACGTTGGTGTGACTCCTTA 839
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 787 CATGGTGATGAAAGAAGGGTTCTACGCTCCTGCAGCTGCTAACGTTGGTGTGACTCCTTA 846
Query 840 TTAAAGAGatatatata 856
||||||||||| |||||
Sbjct 847 TTAAAGAGATAAATATA 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5