BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935473
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45200.2 | Symbols: GOS12 | golgi snare 12 | chr2:18637517-1... 1077 0.0
> AT2G45200.2 | Symbols: GOS12 | golgi snare 12 | chr2:18637517-18640039
REVERSE LENGTH=1345
Length=1345
Score = 1077 bits (583), Expect = 0.0
Identities = 611/625 (98%), Gaps = 0/625 (0%)
Strand=Plus/Plus
Query 255 GGGTATGTTGACGCTGGGTCTCCAACCGTTGGATCGGGGAGATCATGGAAGTCTATGGAG 314
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 GGGTATGTTGACACTGGGTCTCCAACCGTTGGATCGGGGAGATCATGGAAGTCTATGGAG 645
Query 315 ATGGAAATTCAATCGTTGCTTGAGAAGTTGTTGGACATTAATGATTCCATGAGTAGATGT 374
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 646 ATGGAAATTCAATCGTTGCTTGAGAAGTTGTTGGATATTAATGATTCCATGAGTAGATGT 705
Query 375 GCTGCATCTGCTGCACCCACTACATCGGTTACTCAAAAGCTTGCTAGGCACAGGGATATA 434
|||||||||||||||||||| ||||||||||||||||| || || |||||||||||||||
Sbjct 706 GCTGCATCTGCTGCACCCACAACATCGGTTACTCAAAAACTAGCAAGGCACAGGGATATA 765
Query 435 CTTCATGAATATACCCAGGAGTTTCGAAGAATAAAAGGAAATATAAACTCGATGAGAGAA 494
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 766 CTTCATGAATATACCCAGGAGTTTCGAAGAATAAAAGGAAATATAAACTCGTTGAGAGAA 825
Query 495 CATGCTGAGCTTTTGAGTTCTGTCAGGGATGACATAAGTGAATATAAGGCTTCTGGTAGT 554
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 CACGCTGAGCTTCTGAGTTCTGTCAGGGATGACATAAGTGAATATAAGGCTTCTGGTAGT 885
Query 555 ATGTCACCGGGTGTGCAAGTGTTAAGGGAGAGAGCTTCAATTCATGGAAGTATATCCCAT 614
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 886 ATGTCACCAGGTGTGCAAGTGTTAAGGGAGAGAGCTTCAATCCATGGAAGTATATCCCAT 945
Query 615 ATTGATGATGTGATTGGTCAAGCTCAAGCGACAAGAGCAGTTCTTGGCTCTCAACGATCT 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 ATTGATGATGTGATTGGTCAAGCTCAAGCGACAAGAGCAGTTCTTGGCTCTCAACGATCT 1005
Query 675 CTATTTTCAGATGTTCAAGGGAAAGTAAAAAATCTCGGAGACAAATTCCCAGTGATTCGT 734
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 CTGTTTTCAGATGTTCAAGGGAAAGTAAAAAATCTCGGAGACAAATTCCCAGTGATTCGT 1065
Query 735 GGCTTACTTGGTTCAATTAAAAGGAAACGTTCTCGGGACACACTTATCCTCTCCGCTGTC 794
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 GGCTTACTTGGCTCAATTAAAAGGAAACGTTCTCGGGACACACTTATCCTCTCCGCTGTC 1125
Query 795 ATCGCTGCTTGTACGTTGTTTCTAATCATCTACTGGCTCTCAAAATAAACAGAATGTTCA 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 ATCGCTGCTTGTACGTTGTTTCTAATCATCTACTGGCTCTCAAAATAAACAGAATGTTCA 1185
Query 855 TACACCTAAACTATAAAACGAGTTT 879
||||||||| |||||||||||||||
Sbjct 1186 TACACCTAAGCTATAAAACGAGTTT 1210
Score = 422 bits (228), Expect = 4e-117
Identities = 242/249 (97%), Gaps = 0/249 (0%)
Strand=Plus/Plus
Query 7 TTTCAGTTAGAATCAGATCGTCGTTGTACTGAGAGCTCCGGCATTGGTTCACGGCGAAGC 66
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 284 TTTCAGTGAGAATCAGATCGTCGTTGTACTGAGAGCTCCGGCATTGGTTCACGGCGGAGC 343
Query 67 TGGCGAGTTATCTTAGAACGGAGAGGTTACTGATCTGAATTGTTGAAGATCGGAAAATGA 126
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 TGGAGAGTTATCTAAGAACGGAGAGGTTACTGATCTGAATTGTTGAAGATCGGAAAATGA 403
Query 127 CAGAATCGAGTCTGGATCTGCAGGAATCTGGTTGGGAAGAACTGAGGCGGGAAGCTCGTA 186
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 404 CAGAATCGAGTCTGGATCTGCAGGAATCTGGTTGGGAAGAACTTAGGCGGGAAGCTCGTA 463
Query 187 AAATCGAAGGAGATCTAGACGTTAAGCTCTCTTCTTACGCTAAGCTCGGCGCCAGGTTTA 246
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 464 AAATTGAAGGAGATCTAGACGTTAAGCTCTCTTCTTACGCTAAGCTAGGCGCCAGGTTTA 523
Query 247 CTCAAGGCG 255
|||||||||
Sbjct 524 CTCAAGGCG 532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42899961538
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5