BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935474

Length=529
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G45210.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   791    0.0  


> AT2G45210.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr2:18641566-18642704 FORWARD LENGTH=1139
Length=1139

 Score =  791 bits (428),  Expect = 0.0
 Identities = 497/529 (94%), Gaps = 9/529 (2%)
 Strand=Plus/Plus

Query  1    TTT-AAGTTAGCTACAAGAAGATGAGGAAGATCATAGGGTTTAGAATCGGGAGAAGAGTC  59
            ||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  298  TTTAAAGTTAGCTATAAGAAGATGAGGAAGATCATAGGGTTTAGAATCGGGAGACGAGTC  357

Query  60   TCAAGATGGATCCTTCGGAAAACCCGGATCCGACGTTCTGGATACAACCGGATACACTCG  119
            |||||||||||| |||| ||||||||||||| |||||| |||||||||||||||||||||
Sbjct  358  TCAAGATGGATCTTTCGCAAAACCCGGATCCAACGTTCAGGATACAACCGGATACACTCG  417

Query  120  ACCCGA-CAAGCTTGCATGC---TGAGACCATTCTCCAAGCTCAAAAGTTGGGGCCAACG  175
            |||| | |||||||||||||   ||||||||||  |||| ||||||||||||||||||||
Sbjct  418  ACCC-AGCAAGCTTGCATGCTGATGAGACCATTAGCCAAACTCAAAAGTTGGGGCCAACG  476

Query  176  TCTCAAGCAAAGTTTCAGACGTTTCAGGTCTAGGAGAGGATCCGGATACATACCCGTTGA  235
            |||||||||||||||||||||   |||||||| |||| |||||| |||||||||||||||
Sbjct  477  TCTCAAGCAAAGTTTCAGACG---CAGGTCTACGAGAAGATCCGCATACATACCCGTTGA  533

Query  236  TCATAAGAAACCCGACCCGGTTCCAAGGGGACACTTAGCGATCTACGTGGGTCAAAAAGA  295
            |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  534  TCATAAGAAAGCCGACCCGGTTCCAAGGGGACACTTAGCTATCTACGTGGGTCAAAAAGA  593

Query  296  CGGTGACTGTCATAGAGTTTTGGTACCCATCGTTTACTTTAACCATCCTTTGTTCGGTGA  355
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  594  CGGCGACTGTCATAGAGTTTTGGTACCCATCGTTTACTTTAACCATCCTTTGTTCGGTGA  653

Query  356  GCTGCTTCGAGAAGCCGAAAAAGAGTACGGATTTTGCCACGAAGGAGGTATCACTATTCC  415
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  654  GCTGCTTCGAGAAGCCGAAAAAGAGTACGGATTTTGCCACGAAGGAGGTATCACTATTCC  713

Query  416  TTGTTTGTATTCGGACTTCGAACAGGTCAAAACCCGGATCGCATCCGGGTCAAGTTCTCG  475
            |||| ||||||| || ||||||| |||||| |||||||||||||| ||||||||||||||
Sbjct  714  TTGTCTGTATTCAGATTTCGAACGGGTCAAGACCCGGATCGCATCGGGGTCAAGTTCTCG  773

Query  476  GATATTTCCATGGAGCCGTCATTGCCGCAATTGAAGACAATTATGGAAA  524
            | ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  774  GGTATTTCCATGGGGCCGTCATTGCCGCAATTGAAGACAATTATGGAAA  822



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25318010088


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5