BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935476
Length=277
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65930.3 | Symbols: ZWI | kinesin-like calmodulin-binding pr... 206 1e-52
> AT5G65930.3 | Symbols: ZWI | kinesin-like calmodulin-binding
protein (ZWICHEL) | chr5:26369857-26376447 REVERSE LENGTH=4109
Length=4109
Score = 206 bits (111), Expect = 1e-52
Identities = 173/202 (86%), Gaps = 7/202 (3%)
Strand=Plus/Plus
Query 18 AGATATGAAAAGGAAGATTAGAGTTTATTGTCGTATAAGACCTTTTAATGAGAAATG-GA 76
|||||||||| |||||||||||||||||||||| ||||||||| | ||||| ||| | ||
Sbjct 2720 AGATATGAAAGGGAAGATTAGAGTTTATTGTCGAATAAGACCTCTAAATGA-AAAAGAGA 2778
Query 77 CTTCAGAGAGCGAAAAACAAATGCTCACAGTTGTTGATGAATGTACACTTGAGTTTCTAT 136
||||||||| |||||||||||||| ||| ||| ||||| | ||| |||| || ||
Sbjct 2779 GTTCAGAGAGGGAAAAACAAATGCTGACAACTGTGGATGAGTTTACTGTTGAACATCCAT 2838
Query 137 GGAAAGACGAC--AAG-AAG-AAGCACATATATGATCATGTATTTGACATGCGTGCTAGT 192
||||||||||| ||| ||| || ||||||||||||| |||||||||||||||||||||
Sbjct 2839 GGAAAGACGACAAAAGAAAGCAA-CACATATATGATCGCGTATTTGACATGCGTGCTAGT 2897
Query 193 CAAGATGATATCTTTGAAAACA 214
|||||||||||||||||| |||
Sbjct 2898 CAAGATGATATCTTTGAAGACA 2919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12717740497
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5