BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935477
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45240.1 | Symbols: MAP1A | methionine aminopeptidase 1A | c... 2045 0.0
AT4G34070.1 | Symbols: | Calcium-binding EF-hand family protei... 305 5e-82
> AT2G45240.1 | Symbols: MAP1A | methionine aminopeptidase 1A |
chr2:18655939-18659077 FORWARD LENGTH=1488
Length=1488
Score = 2045 bits (1107), Expect = 0.0
Identities = 1192/1232 (97%), Gaps = 9/1232 (1%)
Strand=Plus/Plus
Query 17 AATTGAATGGCCGGTGAATCAGCAGATGCATCCACCATTGCGACTCTTTCCTGTGCTCGC 76
|||||||||||| |||||| |||||||||| | |||||| ||||||||||||||||||
Sbjct 115 AATTGAATGGCCAGTGAAT---CAGATGCATCGAGCATTGCTACTCTTTCCTGTGCTCGC 171
Query 77 TGCGAGAAGCCTGCGCATCTTCAGTGTCCGAAATGCATGGACTTGAAGCTTCCTCGTGAA 136
|||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 172 TGCGAGAAGCCTGCACATCTTCAGTGTCCGAAATGCATAGACTTAAAGCTTCCTCGTGAA 231
Query 137 CAAGCCTCTTTCTGCACTCAAGAATGTTTCAAGGCAGCTTGGAGCTCGCACAAATCAGTA 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 CAAGCCTCTTTCTGCACTCAAGAATGTTTCAAGGCAGCTTGGAGCTCGCACAAATCAGTA 291
Query 197 CATGTGAAAGCTCAGCTGTCTTCAATTGCCACCGGTGATCAGAACTCTGATCTTATTTCT 256
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 292 CATGTGAAAGCTCAGCTGTCTTCAA-T-----CGGTGATCAGAACTCTGATCTTATTTCT 345
Query 257 CAAGGCTGGCTCTATTGCGTCAAGAAAGGCCAGGCTAGAACACCTAAGCTTCCACACTTT 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 CAAGGCTGGCTCTATTGCGTCAAGAAAGGCCAGGCTAGAACACCTAAGCTTCCACACTTT 405
Query 317 GATTGGACTGGGCCCCTAAAGCAATATCCCATATCTACCAAGCGTGTTGTGCCTGCTGAG 376
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 GATTGGACTGGGCCTCTAAAGCAATATCCCATATCTACCAAGCGTGTTGTGCCTGCTGAG 465
Query 377 ATTGAGAAACCTGACTGGGCAATTGATGGGACTCCCAAAGTTGAACCGAATAGTGATCTA 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 ATTGAGAAACCTGACTGGGCAATTGATGGGACTCCCAAAGTTGAACCGAATAGTGATCTA 525
Query 437 CAACATGTTGTTGAGATAAAAACCCCCGAACAAATCCAGAGAATGCGTGAAACCTGTAAA 496
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 526 CAACATGTTGTTGAGATAAAAACGCCTGAACAAATCCAGAGAATGCGTGAAACCTGTAAA 585
Query 497 ATTGCCAGAGAGGTCCTGGATGCAGCCGCTAGGGTGATTCGCCCCGGTGTGACTACTGAT 556
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 586 ATTGCCAGAGAGGTCCTGGATGCAGCCGCTAGGGTGATTCACCCCGGTGTGACTACTGAT 645
Query 557 GAGATTGATCGAGTAGTTCATGAAGCAACTGTTGCAGCAGGAGGATATCCATCGCCCCTC 616
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 646 GAGATTGATCGAGTAGTTCATGAAGCAACTATTGCAGCAGGAGGATATCCATCGCCCCTC 705
Query 617 AACTACTATTTCTTTCCCAAATCTTGCTGCACATCTGTTAATGAAGTAATTTGTCATGGA 676
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 AACTACTATTTCTTTCCGAAATCTTGCTGCACATCTGTTAATGAAGTAATTTGTCATGGA 765
Query 677 ATTCCGGATGCTAGAAAACTAGAAGATGGTGATATAGTAAATGTTGATGTAACAGTCTGT 736
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 766 ATTCCGGATGCTAGGAAACTAGAAGATGGTGATATAGTAAATGTGGATGTAACAGTCTGT 825
Query 737 TATAAAGGTTGCCATGGTGACCTTAATGAGACATACTTTGTTGGAAATGTTGACGAAGCA 796
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 826 TATAAAGGTTGCCATGGTGACCTTAATGAGACATACTTTGTTGGAAACGTTGACGAAGCA 885
Query 797 TCACGTCAACTGGTTAAGTGCACGTACGAGTGCCTGGAGAAAGCCATAGCAATTGTTAAA 856
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 886 TCACGTCAACTGGTTAAGTGCACATACGAGTGCCTGGAGAAAGCTATAGCAATTGTTAAA 945
Query 857 CCTGGAGTAAGATTTCGTGAAATCGGAGAGATAGTCAATCGCCATGCTACAATGTCTGGG 916
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 946 CCTGGAGTAAGATTTCGTGAAATTGGAGAGATAGTCAACCGCCATGCTACAATGTCTGGG 1005
Query 917 TTATCAGTGGTGAGATCCTATTGTGGTCATGGTATTGGAGATCTCTTCCATTGTGCCCCA 976
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1006 TTATCAGTGGTGAGATCTTATTGTGGTCATGGTATTGGAGATCTCTTCCATTGTGCTCCA 1065
Query 977 AACATTCCTCACTATGCAAGAAACAAAGCAGTTGGAGTGATGAAAGCAGGTCAGACTTTC 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 AACATTCCTCACTATGCAAGAAACAAAGCAGTTGGAGTGATGAAAGCAGGTCAGACTTTC 1125
Query 1037 ACAATCGAGCCAATGATCAACGCAGGGACATGGCGGGATCGAACATGGCCTGATGGATGG 1096
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1126 ACAATCGAGCCAATGATCAACGCAGGGGGGTGGAGGGATCGAACATGGCCTGATGGATGG 1185
Query 1097 ACTGCAGTTACCGCAGATGGAAAACGCAGCGCTCAGTTTGAGCATACCCTCTTGGTAACG 1156
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1186 ACTGCAGTTACCGCAGATGGAAAACGCAGCGCTCAGTTTGAGCATACCCTATTGGTAACG 1245
Query 1157 GAGACTGGTGTTGAGGTTTTAACAGCGAGGCTTCCGTCATCACCTGACGTATACCCTTGG 1216
||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 1246 GAGACTGGTGTTGAGGTTTTAACAGCGAGGCTTCCTTCATCGCCTGACGTATATCCTTGG 1305
Query 1217 CTTACCAAGTGATTAAGTGTATGGTTCCTTTT 1248
|||||||||||||||||||| |||||||||||
Sbjct 1306 CTTACCAAGTGATTAAGTGTTTGGTTCCTTTT 1337
> AT4G34070.1 | Symbols: | Calcium-binding EF-hand family protein
| chr4:16323095-16325295 REVERSE LENGTH=1230
Length=1230
Score = 305 bits (165), Expect = 5e-82
Identities = 177/183 (97%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 1066 ATGGCGGGATCGAACATGGCCTGATGGATGGACTGCAGTTACCGCAGATGGAAAACGCAG 1125
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 ATGGAGGGATCGAACATGGCCTGATGGATGGACTGCAGTTACCGCAGATGGAAAACGCAG 1020
Query 1126 CGCTCAGTTTGAGCATACCCTCTTGGTAACGGAGACTGGTGTTGAGGTTTTAACAGCGAG 1185
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1021 CGCTCAGTTTGAGCATACCCTATTGGTAACTGAGACTGGTGTTGAGGTTTTAACAGCGAG 1080
Query 1186 GCTTCCGTCATCACCTGACGTATACCCTTGGCTTACCAAGTGATTAAGTGTATGGTTCCT 1245
|||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1081 GCTTCCTTCATCGCCTGACGTATACCCTTGGCTTACCAAGTGATTAAGTGTTTGGTTCCT 1140
Query 1246 TTT 1248
|||
Sbjct 1141 TTT 1143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61345065990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5