BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935483
Length=1363
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45310.1 | Symbols: GAE4 | UDP-D-glucuronate 4-epimerase 4 |... 2316 0.0
AT2G45315.1 | Symbols: | other RNA | chr2:18682108-18683810 RE... 1973 0.0
AT1G02000.1 | Symbols: GAE2 | UDP-D-glucuronate 4-epimerase 2 |... 713 0.0
AT4G00110.1 | Symbols: GAE3 | UDP-D-glucuronate 4-epimerase 3 |... 623 1e-177
AT4G30440.1 | Symbols: GAE1 | UDP-D-glucuronate 4-epimerase 1 |... 399 3e-110
> AT2G45310.1 | Symbols: GAE4 | UDP-D-glucuronate 4-epimerase 4
| chr2:18682081-18684042 FORWARD LENGTH=1962
Length=1962
Score = 2316 bits (1254), Expect = 0.0
Identities = 1312/1341 (98%), Gaps = 0/1341 (0%)
Strand=Plus/Plus
Query 18 GAGAAAATGTCGCGTCTTGACGACATACCTTCAAGCCCAGGCAAATTCAAGATGGAGAAA 77
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 GAGAAAATGTCACGTCTTGACGACATACCTTCAAGCCCAGGCAAATTCAAGATGGAGAAA 625
Query 78 TCTTCTTACTTGCATCGTCTCAGATTCCAAtcttctctcacaaagtttgcatttttctcc 137
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 TCTTCCTACTTGCATCGTCTCAGATTCCAATCTTCTCTCACAAAGTTTGCATTTTTCTCC 685
Query 138 ttcttcctcctctgtctcatctctctactcttcctccgatctccCCCGTCCATTAACCCT 197
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 686 TTCTTCCTCCTCTGTCTCATCTCTCTACTCTTCCTCCGATCTCCACCGTCCATTAACCCT 745
Query 198 TCTTCACCGTCCGATCCATCTCGCCGCTCACTCCGAACCAACAGCTACGGAGGACCAGCT 257
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 746 TCTTCACCGTCCGATCCATCTCGCCGTTCACTCCGAACCAACACCTACGGAGGACCAGCT 805
Query 258 TGGGAAAAACGTCTCCGATCCTCAGCTCGAATCCGAACCTCAACAAACAACGGAATCACA 317
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 TGGGAAAAACGTCTCAGATCCTCAGCTCGAATCCGAACCTCAACAAACAACGGAATCACA 865
Query 318 GTTTTAGTCACCGGAGCAGCTGGTTTCGTCGGAACACACGTCTCCGCCGCATTAAAACGC 377
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 866 GTTTTAGTAACCGGAGCAGCTGGTTTCGTCGGAACACACGTCTCCGCCGCATTAAAACGC 925
Query 378 CGCGGAGACGGCGTAATCGGCCTCGACAACTTCAACGATTACTACGATCCATCTCTGAAA 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 CGCGGAGACGGCGTAATCGGCCTCGACAACTTCAACGATTACTACGATCCATCTCTGAAA 985
Query 438 CGAGCAAGACAAGCTTTGCTCGAAAGAAGTGGGATCTTCATCGTAGAAGGAGACATAAAC 497
|||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 986 CGAGCAAGACGAGCTTTACTCGAGAGAAGTGGGATCTTCATCGTAGAAGGAGACATAAAC 1045
Query 498 GACGTCGAATTGCTTCGTAAGCTATTCAAGATCGTCTCCTTCACACACGTTATGCATTTA 557
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 GACGTCGAATTACTCCGTAAGCTATTCAAGATCGTCTCCTTCACACACGTTATGCATTTA 1105
Query 558 GCAGCTCAAGCTGGTGTACGGTACGCAATGGAAAACCCTAGCTCTTATGTTCATAGCAAC 617
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1106 GCAGCTCAAGCTGGTGTACGGTACGCAATGGAAAACCCTAGCTCGTACGTTCATAGCAAC 1165
Query 618 ATCGCCGGATTTGTCAATCTCCTCGAGATCTGCAAATCTGTGAATCCACAACCTGCTATA 677
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 ATCGCCGGATTCGTCAATCTCCTCGAGATCTGCAAATCTGTGAATCCACAACCTGCTATA 1225
Query 678 GTCTGGGCTTCGTCTAGCTCCGTCTACGGACTCAACACGAAAGTTCCGTTCTCGGAGAAA 737
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1226 GTCTGGGCTTCGTCTAGCTCCGTCTACGGACTCAACACCAAAGTTCCGTTCTCGGAGAAA 1285
Query 738 GATAAAACAGATCAACCGGCGAGTTTATACGCCGCGACTAAAAAAGCCGGCGAAGAGATC 797
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1286 GATAAAACAGATCAACCGGCGAGTTTATACGCCGCCACTAAAAAAGCCGGCGAAGAGATC 1345
Query 798 GCACATACCTATAACCACATCTATGGATTATCTCTAACCGGATTAAGGTTTTTCACGGTG 857
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1346 GCACATACCTACAACCACATCTATGGATTATCTCTAACCGGATTAAGATTTTTCACCGTG 1405
Query 858 TATGGACCTTGGGGAAGACCAGACATGGCGTATTTCTTCTTCACTAAAGATATTCTAAAA 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 TATGGACCTTGGGGAAGACCAGACATGGCGTATTTCTTCTTCACTAAAGATATTCTAAAA 1465
Query 918 GGCAAATCGATTTCGATATTCGAATCGGCGAATCACGGAACGGTGGCTAGGGATTTCACT 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1466 GGCAAATCGATTTCGATATTCGAATCGGCGAATCACGGAACGGTGGCTAGGGATTTCACT 1525
Query 978 TACATCGACGATATAGTGAAAGGATGTTTAGCGGCGCTAGATACGGCGGAGAAGAGTACA 1037
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1526 TACATAGACGATATAGTGAAGGGATGTTTAGCGGCGCTAGATACGGCGGAGAAGAGTACA 1585
Query 1038 GGAAGTGGAGGGAAGAAGAGAGGTCCGGCGCAATTGAGAGTGTTTAACCTCGGAAACACG 1097
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1586 GGGAGTGGAGGGAAGAAGAGAGGTCCGGCGCAATTGAGAGTGTTTAACCTCGGAAACACG 1645
Query 1098 TCGCCGGTGCCGGTTTCAGATCTGGTGAGAATATTGGAGAGACAATTGAAAGTGAAGGCG 1157
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1646 TCGCCGGTGCCGGTTTCAGATCTGGTGAGGATATTGGAGAGACAATTGAAAGTGAAGGCG 1705
Query 1158 AAGAAGAATTTGATTAAGATGCCACGAAACGGTGACGTTCCGTTTACTCATGCTAATATT 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1706 AAGAAGAATTTGATTAAGATGCCACGAAACGGTGACGTTCCGTTTACTCATGCTAATATT 1765
Query 1218 AGTTTAGCTCAACGTGAGCTTGGTTATAAACCGACGACGGATTTGCAAACCGGTTTGAAG 1277
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1766 AGTTTAGCTCAACGTGAGCTTGGTTATAAACCGACTACGGATTTGCAAACCGGTTTGAAG 1825
Query 1278 AAGTTTGTGAGATGGTATTTGAGTTATTACTCCGGCGAGAAAAAAGCCGCCGCTAGATGA 1337
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1826 AAGTTTGTCAGATGGTATTTGAGTTATTACTCCGGCGACAAAAAAGCCGCCGCTAGATGA 1885
Query 1338 tttttttttttGGTTGATGAT 1358
| ||||||| |||||||||||
Sbjct 1886 TCTTTTTTTCTGGTTGATGAT 1906
> AT2G45315.1 | Symbols: | other RNA | chr2:18682108-18683810
REVERSE LENGTH=1448
Length=1448
Score = 1973 bits (1068), Expect = 0.0
Identities = 1114/1137 (98%), Gaps = 0/1137 (0%)
Strand=Plus/Minus
Query 46 CTTCAAGCCCAGGCAAATTCAAGATGGAGAAATCTTCTTACTTGCATCGTCTCAGATTCC 105
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1137 CTTCAAGCCCAGGCAAATTCAAGATGGAGAAATCTTCCTACTTGCATCGTCTCAGATTCC 1078
Query 106 AAtcttctctcacaaagtttgcatttttctccttcttcctcctctgtctcatctctctac 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 AATCTTCTCTCACAAAGTTTGCATTTTTCTCCTTCTTCCTCCTCTGTCTCATCTCTCTAC 1018
Query 166 tcttcctccgatctccCCCGTCCATTAACCCTTCTTCACCGTCCGATCCATCTCGCCGCT 225
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1017 TCTTCCTCCGATCTCCACCGTCCATTAACCCTTCTTCACCGTCCGATCCATCTCGCCGTT 958
Query 226 CACTCCGAACCAACAGCTACGGAGGACCAGCTTGGGAAAAACGTCTCCGATCCTCAGCTC 285
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 957 CACTCCGAACCAACACCTACGGAGGACCAGCTTGGGAAAAACGTCTCAGATCCTCAGCTC 898
Query 286 GAATCCGAACCTCAACAAACAACGGAATCACAGTTTTAGTCACCGGAGCAGCTGGTTTCG 345
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 897 GAATCCGAACCTCAACAAACAACGGAATCACAGTTTTAGTAACCGGAGCAGCTGGTTTCG 838
Query 346 TCGGAACACACGTCTCCGCCGCATTAAAACGCCGCGGAGACGGCGTAATCGGCCTCGACA 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TCGGAACACACGTCTCCGCCGCATTAAAACGCCGCGGAGACGGCGTAATCGGCCTCGACA 778
Query 406 ACTTCAACGATTACTACGATCCATCTCTGAAACGAGCAAGACAAGCTTTGCTCGAAAGAA 465
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||
Sbjct 777 ACTTCAACGATTACTACGATCCATCTCTGAAACGAGCAAGACGAGCTTTACTCGAGAGAA 718
Query 466 GTGGGATCTTCATCGTAGAAGGAGACATAAACGACGTCGAATTGCTTCGTAAGCTATTCA 525
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 717 GTGGGATCTTCATCGTAGAAGGAGACATAAACGACGTCGAATTACTCCGTAAGCTATTCA 658
Query 526 AGATCGTCTCCTTCACACACGTTATGCATTTAGCAGCTCAAGCTGGTGTACGGTACGCAA 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AGATCGTCTCCTTCACACACGTTATGCATTTAGCAGCTCAAGCTGGTGTACGGTACGCAA 598
Query 586 TGGAAAACCCTAGCTCTTATGTTCATAGCAACATCGCCGGATTTGTCAATCTCCTCGAGA 645
|||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 597 TGGAAAACCCTAGCTCGTACGTTCATAGCAACATCGCCGGATTCGTCAATCTCCTCGAGA 538
Query 646 TCTGCAAATCTGTGAATCCACAACCTGCTATAGTCTGGGCTTCGTCTAGCTCCGTCTACG 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TCTGCAAATCTGTGAATCCACAACCTGCTATAGTCTGGGCTTCGTCTAGCTCCGTCTACG 478
Query 706 GACTCAACACGAAAGTTCCGTTCTCGGAGAAAGATAAAACAGATCAACCGGCGAGTTTAT 765
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GACTCAACACCAAAGTTCCGTTCTCGGAGAAAGATAAAACAGATCAACCGGCGAGTTTAT 418
Query 766 ACGCCGCGACTAAAAAAGCCGGCGAAGAGATCGCACATACCTATAACCACATCTATGGAT 825
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 417 ACGCCGCCACTAAAAAAGCCGGCGAAGAGATCGCACATACCTACAACCACATCTATGGAT 358
Query 826 TATCTCTAACCGGATTAAGGTTTTTCACGGTGTATGGACCTTGGGGAAGACCAGACATGG 885
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 357 TATCTCTAACCGGATTAAGATTTTTCACCGTGTATGGACCTTGGGGAAGACCAGACATGG 298
Query 886 CGTATTTCTTCTTCACTAAAGATATTCTAAAAGGCAAATCGATTTCGATATTCGAATCGG 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CGTATTTCTTCTTCACTAAAGATATTCTAAAAGGCAAATCGATTTCGATATTCGAATCGG 238
Query 946 CGAATCACGGAACGGTGGCTAGGGATTTCACTTACATCGACGATATAGTGAAAGGATGTT 1005
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 237 CGAATCACGGAACGGTGGCTAGGGATTTCACTTACATAGACGATATAGTGAAGGGATGTT 178
Query 1006 TAGCGGCGCTAGATACGGCGGAGAAGAGTACAGGAAGTGGAGGGAAGAAGAGAGGTCCGG 1065
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 177 TAGCGGCGCTAGATACGGCGGAGAAGAGTACAGGGAGTGGAGGGAAGAAGAGAGGTCCGG 118
Query 1066 CGCAATTGAGAGTGTTTAACCTCGGAAACACGTCGCCGGTGCCGGTTTCAGATCTGGTGA 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 CGCAATTGAGAGTGTTTAACCTCGGAAACACGTCGCCGGTGCCGGTTTCAGATCTGGTGA 58
Query 1126 GAATATTGGAGAGACAATTGAAAGTGAAGGCGAAGAAGAATTTGATTAAGATGCCAC 1182
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 GGATATTGGAGAGACAATTGAAAGTGAAGGCGAAGAAGAATTTGATTAAGATGCCAC 1
> AT1G02000.1 | Symbols: GAE2 | UDP-D-glucuronate 4-epimerase 2
| chr1:345812-347592 FORWARD LENGTH=1781
Length=1781
Score = 713 bits (386), Expect = 0.0
Identities = 884/1121 (79%), Gaps = 48/1121 (4%)
Strand=Plus/Plus
Query 208 CCGA-TCCATCTCGCCGCTCACTCCGAACCAACAGC-TACGGAGGACCAGCTTGGGAAAA 265
|||| ||| ||||||||||| || || ||| || | | || || || || ||||| ||
Sbjct 416 CCGATTCC-TCTCGCCGCTCTCTTCGCACCTAC-TCTTGGGGCGGTCCCGCCTGGGAGAA 473
Query 266 ACGTC-TCCGATCCTCAGCTCGAATCCGAACCTCAACAAACAACGGAATCACAGTTTTAG 324
||| | |||||||||| ||||| |||| | | | | |||||| || | ||| | |
Sbjct 474 ACG-CGTCCGATCCTCCGCTCGTGTCCGCA-C-C--C--GCAACGGCGTCTCCGTTCTCG 526
Query 325 TCACCGGAGCAGCTGGTTTCGTCGGAACACACGTCTCCGCCGCAT-TAAAACGCCGCGGA 383
||||||| || || ||||||||||| || |||||||| ||||| | | ||||| |||||
Sbjct 527 TCACCGGGGCCGCCGGTTTCGTCGGGACTCACGTCTCTGCCGC-TCTTAAACGACGCGGC 585
Query 384 GACGGCGTAATCGGCCTCGACAACTTCAACGATTACTACGAT-CCATCTCTGAA-ACGAG 441
|||||||| | ||||||||||||||||||||||||||||| || ||||| || | ||
Sbjct 586 GACGGCGTTCTAGGCCTCGACAACTTCAACGATTACTACGACACC-TCTCTCAAGA-GAT 643
Query 442 CAAGACAAGCTTTGCTCGAAAGAAGTGG-GATCTTCATCGTAGAAGGAGACATAAACGA- 499
| ||||||| | ||||| ||||| || | | |||||||| ||||||||||| |||||
Sbjct 644 CTCGACAAGCCCTCCTCGAGAGAAGCGGAG-TGTTCATCGTTGAAGGAGACATCAACGAT 702
Query 500 C-GTCGAATTGCTTC--GTAAGCTATTCAAGATCGTCTCCTT-CACACACGTTATGCAT- 554
| ||| | || | | ||||| ||| || ||||| |||| ||| ||||| ||||||
Sbjct 703 CTGTCTC-TC-CT-CAAG-AAGCTCTTCGAGGTCGTC-CCTTTCACTCACGTCATGCATC 757
Query 555 TTAGCAGCTCAAGCTGGTGTACGG-TACGCAATGGAAAACCCTAGCTCTTATGTTCATAG 613
|| || |||||||||||||| | | ||||| ||||| ||||| |||| || ||||| ||
Sbjct 758 TT-GCCGCTCAAGCTGGTGT-CAGATACGCCATGGAGAACCCCGGCTCCTACGTTCACAG 815
Query 614 CAACATCGCCGGATTT-GTCAATCTCCTCGAGATCTGCAAATCTG-TGAATCCACAACCT 671
||||||||| || ||| || || ||||||||| |||| ||||| | | ||||| || ||
Sbjct 816 CAACATCGCTGG-TTTCGTTAACCTCCTCGAGGTCTGTAAATCCGCT-AATCCTCAGCCG 873
Query 672 GCTATAGTCTGGGCTTCGTCTAGCTCCGTCTACGGACTCAACACGAAAGTTCCGTTCTCG 731
|| || || ||||| |||||||||||||||||||| | ||||| ||||| || |||||
Sbjct 874 GCGATCGTGTGGGCATCGTCTAGCTCCGTCTACGGTTTAAACACCAAAGTCCCCTTCTCT 933
Query 732 GAGAAAGATAAAACAGATCAACCGGCGAGTTTATACGCCGCGACTAAAAAAGCCGGCGAA 791
|||||||| | ||||||||| || |||||| | ||||| ||||| || ||||| || |||
Sbjct 934 GAGAAAGACAGAACAGATCAGCCTGCGAGTCTCTACGCTGCGACCAAGAAAGCTGGAGAA 993
Query 792 GAGATCGCACATACCTATAACCACATCTATGGATTATCTCTAACCGGATTAAGGTTTTTC 851
||||| || || || || ||||||||||| || | ||||| ||||| || |||||||||
Sbjct 994 GAGATTGCCCACACTTACAACCACATCTACGGGCTCTCTCTCACCGGCTTGAGGTTTTTC 1053
Query 852 ACGGTGTATGGACCTTGGGGAAGACCAGACATGGCGTATTTCTTCTTCACTAAAGATATT 911
|||||||| || || ||||||||||| |||||||| || ||||||||||| | ||| ||
Sbjct 1054 ACGGTGTACGGGCCGTGGGGAAGACCTGACATGGCTTACTTCTTCTTCACCAGAGACATC 1113
Query 912 CTAAAAGGCAAATCGATTTCGATATTCGAATCG-GCGAATCACGGAACGGTGGCTAGGGA 970
|| ||||| ||| | |||||||| |||||| | || ||||||||||| |||||||||||
Sbjct 1114 CTCAAAGGGAAAGCTATTTCGATCTTCGAAG-GAGCCAATCACGGAACAGTGGCTAGGGA 1172
Query 971 TTTCACTTACATCGACGATATAGTGAAAGGATGTTTAGCGGCGCTAGATACGGCGGAGAA 1030
|||||| |||||||| || ||||||||||||||||| | ||| || || |||||||||||
Sbjct 1173 TTTCACATACATCGATGACATAGTGAAAGGATGTTTGGGGGCTCTGGACACGGCGGAGAA 1232
Query 1031 GAGTACAGGAAGTGGAGGGAAGAAGAGAGGTCCGGCGCAATTGAGAGTGTTTAACCTCGG 1090
||| ||||| ||||| || |||||| | || |||| || | || || || ||||| ||
Sbjct 1233 GAGCACAGGGAGTGGTGGCAAGAAGCGGGGAGCGGCTCAGCTAAGGGTATTCAACCTGGG 1292
Query 1091 AAACACGTCGCCGGTGCCGGTTTCAGATCTGGTGAGAATATTGGAGAGACAATTGAAAGT 1150
||||| || ||||||||||| | ||||| ||||| |||||||||||| ||||||||
Sbjct 1293 GAACACATCTCCGGTGCCGGTGACGGATCTTGTGAGTATATTGGAGAGATTGTTGAAAGT 1352
Query 1151 GAAGGCGAAGAAGAATTTGATTAAGATGCC-ACGAAACGGTGACGTTCCGTTTACTCATG 1209
||| || |||| ||| |||| ||| |||| | ||| ||||| || || || || ||||
Sbjct 1353 GAAAGCCAAGAGGAACATGATGAAGCTGCCGAGGAAT-GGTGATGTGCCCTTCACACATG 1411
Query 1210 CTAATATTAGTTTAGCTCA-ACGTGAGCTTGGTTATAAACCGA-CGACGGATTTGCAAAC 1267
||||||| |||| || || | | ||| |||| || ||||| | | ||||||||||| ||
Sbjct 1412 CTAATATCAGTTCGGCACAGA-GAGAGTTTGGGTACAAACCAAGC-ACGGATTTGCAGAC 1469
Query 1268 CGGTTTGAAGAAGTTTGTGAGATGGTAT-TTGAGTTATTAC 1307
||| | ||||||||||||||||||||| ||| |||| |||
Sbjct 1470 TGGTCTAAAGAAGTTTGTGAGATGGTATCTTG-GTTACTAC 1509
> AT4G00110.1 | Symbols: GAE3 | UDP-D-glucuronate 4-epimerase 3
| chr4:38504-40189 REVERSE LENGTH=1686
Length=1686
Score = 623 bits (337), Expect = 1e-177
Identities = 895/1160 (77%), Gaps = 55/1160 (5%)
Strand=Plus/Plus
Query 204 CCGTCCGATCCATCTCGCCGCTCACTCCGAACCAACAGCTACGGAGGACCAGCTTGGGAA 263
||| ||||||| |||||||| || || || ||| || || || ||||| ||||||||
Sbjct 365 CCG-CCGATCCTTCTCGCCGTTCTCTTCGTACCTACTCCTGGGGTGGACCCGCTTGGGAG 423
Query 264 AAACGTCTCCGATCCTCAGCTCGAATCCGAACCTCAACAAACAACGGAATCACAGTTTTA 323
||||| || ||||||| || || |||| ||| | | | ||| || | ||| |
Sbjct 424 AAACGGGTCAGATCCTCCGCCCGTCTCCGTACC-C-GC---C-GCGGTTTCTCTGTTCTC 477
Query 324 GTCACCGGAGCAGCTGGTTTCGTCGGAACACACGTCTCCGCCGCAT-TAAAACGCCGCGG 382
||||||||||| || ||||||||||| || || ||||||||||| | | |||||||||||
Sbjct 478 GTCACCGGAGCCGCCGGTTTCGTCGGTACCCATGTCTCCGCCGC-TCTCAAACGCCGCGG 536
Query 383 AGACGGCGTAATCGGCCTCGACAACTTCAACGATTACTACGATCCATCTCTGAA-ACGAG 441
||| ||||| | || || ||||||||||||||||||||||||||||| || || | |||
Sbjct 537 AGATGGCGTTCTGGGGCTTGACAACTTCAACGATTACTACGATCCATCGCTCAAGA-GAG 595
Query 442 CAAGACAAGC--TTTGCTCGAAAGAAGTGG-GATCTTCATCGTAGAAGGAGACATAAACG 498
|||| ||||| ||| | || ||||| || | | || | || ||||||||||| || |
Sbjct 596 CAAGGCAAGCCCTTT--TGGAGAGAAGCGGAG-TGTTTGTTGTTGAAGGAGACATCAATG 652
Query 499 ACG-TCGAAT-TGCTTCGTA-A-GCTATTC-AAGATCGTCTCC-TTCACACACGTTATGC 552
||| | | | | ||| | | | ||| || ||| | || ||| || || ||||||||||
Sbjct 653 ACGCT-GC-TCT-CTT-GAAGAAGCTCTTTGAAGTT-GT-TCCCTTTACCCACGTTATGC 706
Query 553 ATTTAGCAGCTCAAGCTGGTGT-ACGGTACGCAATGGAAAACCCTAGCTCTTATGTTCAT 611
|||| || |||||||||||||| | ||||||| |||||||| |||||||||||||||||
Sbjct 707 ATTTGGCTGCTCAAGCTGGTGTCA-GGTACGCCATGGAAAATCCTAGCTCTTATGTTCAC 765
Query 612 AGCAACATCGCCGGATTTGTCAATCTCCTCGAGATCTGCAAATCTGTGAATCCACAACCT 671
|| |||||||| || || ||||||||||| ||| | |||||||||| ||||| |||||
Sbjct 766 AGTAACATCGCTGGCTTCGTCAATCTCCTTGAGGTTTGCAAATCTGCCAATCCCCAACCC 825
Query 672 GCTATAGTCTGGGCTTCGTCTAGCTCCGTCTACGGACTCAACACGAAAGTTCCGTTCTCG 731
|| || ||||||||||| |||||||| |||||||| |||||||| || || || |||||
Sbjct 826 GCCATTGTCTGGGCTTCCTCTAGCTCTGTCTACGGGCTCAACACTAAGGTCCCCTTCTCC 885
Query 732 GAGAAAGATAAAACAGATCAACCGGCGAGTTTATACGCCGCGACTAAAAAAGCCGGCGAA 791
|||||||| | ||| || ||||| || ||| | || || || ||||| || || || |||
Sbjct 886 GAGAAAGACAGAACTGACCAACCAGCTAGTCTCTATGCTGCTACTAAGAAGGCTGGTGAA 945
Query 792 GAGATCGCACATACCTATAACCACATCTATGGATTATCTCTAACCGGATTAAGGTTTTTC 851
||||| || || || || || |||||||||||| | ||||| || || || |||||||||
Sbjct 946 GAGATTGCTCACACTTACAATCACATCTATGGACTCTCTCTTACTGGCTTGAGGTTTTTC 1005
Query 852 ACGGTGTATGGACCTTGGGGAAGACCAGACATGGCGTATTTCTTCTTCACTAAAGATATT 911
|| || ||||| ||||||||||| || |||||||| |||||||||||||| | ||| |||
Sbjct 1006 ACCGTCTATGGTCCTTGGGGAAGGCCTGACATGGCCTATTTCTTCTTCACCAGAGACATT 1065
Query 912 CTAAAAGGCAAATCGATTTCGATATTCGAATCGG-CGAATCACGGAACGGTGGCTAGGGA 970
|| ||||| ||| | ||||| || || || || | || || ||||| |||||||||||
Sbjct 1066 CTCAAAGGGAAAGCCATTTCAATCTTTGAGGGGGTC-AACCATGGAACCGTGGCTAGGGA 1124
Query 971 TTTCACTTACATCGACGATATAGTGAAAGGATGTTTAGCGGCGCTAGATACGGCGGAGAA 1030
||||||||||| || || || || || || ||||||| ||| | || ||||| |||||
Sbjct 1125 CTTCACTTACATTGATGACATTGTCAAGGGGTGTTTAGGGGCTTTGGACACGGCTGAGAA 1184
Query 1031 GAGTACAGGAAGTGGAGGGAAGAAGAGAGGTCCGGCGCAATTGA-GAGTGTTT-AACCTC 1088
||| || || ||||| || |||||| | ||| |||| || || | | || ||| || |||
Sbjct 1185 GAGCACTGGTAGTGGTGGTAAGAAGCGCGGTGCGGCTCAGTT-ACGGGT-TTTCAATCTC 1242
Query 1089 GGAAACACGTCGCCGGTGCCGGTTTCAGATCTGGTGAGAATA-TTGGAGAGACAAT-TGA 1146
|| ||||| ||||| || || || | ||||| || | || ||| |||||| | | |
Sbjct 1243 GGCAACACTTCGCCCGTTCCAGTGACTGATCTTGTCACCATTCTTG-AGAGACT-TCTCA 1300
Query 1147 AAGTGAAGGCGAAGAAGAAT-TTGATTAAGATGCC-ACGAAACGGTGACGTTCCGTTTAC 1204
|||| ||||| |||| ||| || || ||| |||| | ||| ||| || || | ||| ||
Sbjct 1301 AAGTCAAGGCCAAGAGGAACATT-ATGAAGTTGCCGAGGAA-CGGGGATGTGCAGTTCAC 1358
Query 1205 TCATGCTAATATTAGTT-TAGCTCA-ACGTGAGCTTGGTTATAAACCGACGACGGAT-TT 1261
|||||||||||| |||| | || || | | ||||| || || ||||| || || ||| ||
Sbjct 1359 TCATGCTAATATCAGTTCT-GCGCAGA-GAGAGCTCGGCTACAAACCCACCACCGATCTT 1416
Query 1262 GCAAACCGGTTTGAAGAAGTTTGTGAGATGGTATTTGAGTTATTACTCCGGCGAGAAA-A 1320
|| || ||| | |||||||||| ||||||||||||| |||| ||| |||| |||| |
Sbjct 1417 -CAGACGGGTCTCAAGAAGTTTGCGAGATGGTATTTGGGTTACTACAATGGCG-GAAAGA 1474
Query 1321 AAGCCGCC-GCTAGATGAtt 1339
|||| || ||| |||||||
Sbjct 1475 AAGCTGCAAGCT-GATGATT 1493
> AT4G30440.1 | Symbols: GAE1 | UDP-D-glucuronate 4-epimerase 1
| chr4:14881855-14883480 REVERSE LENGTH=1626
Length=1626
Score = 399 bits (216), Expect = 3e-110
Identities = 699/923 (76%), Gaps = 70/923 (8%)
Strand=Plus/Plus
Query 408 TTCAACGATTACTACGATCCATC-TCTGAAACGAGCAAG-ACA-AGCT-TTGCTCGAAAG 463
|||||| ||||||||||||| || | ||||||| || | | | || ||| ||| |
Sbjct 573 TTCAACAATTACTACGATCCGTCGT-TGAAACGTGCTCGTAGATCTCTGTTG-TCG-TCG 629
Query 464 AAGTGGGATCTTCATCGTAGAAGGAGA-CATAAACGACGTCGAA-TTGCTTCG-TAAGCT 520
|| ||||||||| |||| |||||||| | ||||||||| |||| || || | |||||
Sbjct 630 -AGAGGGATCTTCGTCGTTGAAGGAGATC-TAAACGACG-CGAAGCTG-TTAGCAAAGCT 685
Query 521 ATTC-AAGATCGTCT-CCTTCACACACGTTATGCATTTAGCAGCTCAAGCTGGTG-TACG 577
||| | | | || | | ||||| ||||| |||||| | || ||||||||||||| || |
Sbjct 686 TTTCGATG-TGGT-TGCTTTCACTCACGTGATGCATCTCGCTGCTCAAGCTGGTGTTA-G 742
Query 578 GTACGCAATGGAAAACCCT-AGCTCTTATGTTCATAGCAACATCGCCGGATTTGTCAATC 636
||||| |||| || ||| | || |||||||||||||||||||||||| |||| ||||
Sbjct 743 ATACGCTTTGGAGAATCCTCA-ATCGTATGTTCATAGCAACATCGCCGGACTTGTGAATC 801
Query 637 TCCTCGAGATCTGCAAATCTGTGAATCCACAACCTGCTATAGTCTGGGCTTCGTCTAGCT 696
| |||||||| |||||| | | |||||| || || || ||||| |||||||| || ||||
Sbjct 802 TTCTCGAGATTTGCAAAGCGGCGAATCCTCAGCCGGCGATAGTTTGGGCTTCATCGAGCT 861
Query 697 CCGTCTACGGACTCAAC-ACGAAAGTTCCGTTCTCGGAGA-AAGATAAAACAGATCAACC 754
|||| || ||||||||| | ||||||||| ||||| || | || || ||||||||
Sbjct 862 CCGTTTATGGACTCAACGA-GAAAGTTCCATTCTCTGA-ATCTGACCGGACGGATCAACC 919
Query 755 GGCGAGTTTATACGCCGCGACTAAAAAAGCCGGCGAAGAGATCGCACATACCTATAACCA 814
||||||| | |||||||| || ||||||||||||||||| ||| | || || ||||||||
Sbjct 920 GGCGAGTCTCTACGCCGCAACGAAAAAAGCCGGCGAAGAAATCACCCACACTTATAACCA 979
Query 815 CATCTATGGAT-TAT-CTC-TAACCGGATTAAGGTTTTTCACGGTGTATGGACCTTGGGG 871
|| || || | | | | | | ||||| ||||| || |||||||| || ||||| |||||
Sbjct 980 TATTTACGG-TCT-TGC-CATTACCGGTTTAAGATTCTTCACGGTTTACGGACCATGGGG 1036
Query 872 AAGACCAGACATGGCGTATTTCTTCTTCACTA-AAGATATTCTAAAAGGCAAATCGATTT 930
||||| || ||||| || |||| |||||| | || | || ||| |||| ||| ||| |
Sbjct 1037 TAGACCGGATATGGCTTACTTCTCCTTCACCAGAA-ACATCCTACAAGGTAAACCGA--T 1093
Query 931 CGATATTCGAATCGGCG-AATCA-CGGAACG--GTGGCTAGGGATTTCACTTACATCGAC 986
| | | || | ||| | || | ||| || | || |||||||||| |||||||||
Sbjct 1094 C-ACAATC-TACCGGGGCAAAAACCGGGTCGATTTAGCCCGGGATTTCACATACATCGAC 1151
Query 987 GATATAGTGAAAGGATGTTTAGCGG-CGCTAGATACGGCGGAG-AAGAGTACAGGAAGT- 1043
|||||||||||||||||||||| | | || ||| | ||| | || ||||| || ||
Sbjct 1152 GATATAGTGAAAGGATGTTTAG-GATCTCTGGATTCATCGG-GTAAAAGTACCGG--GTC 1207
Query 1044 GGAG-GG-AAGAAGA-GAGGTCCGGCGCAATTGAG-AGTGTTTAACCTCGGAAACACGTC 1099
|| | || || || | | || | || | | | | | |||||||| |||||||| ||
Sbjct 1208 GG-GTGGTAAAAA-ACGTGGAGCAGCACCGTACCGGA-TATTTAACCTGGGAAACACATC 1264
Query 1100 GCCGGTGCCGGTTTCAGAT-CTGGTGAGA-ATATTGGAGA-GACAATTGAAAG-TGAAGG 1155
||||| | || | ||| |||||| || |||||||||| | || || |||| |||| |
Sbjct 1265 TCCGGTTACAGTACC-GATTCTGGTG-GATATATTGGAGAAG-CATTT-AAAGGTGAAAG 1320
Query 1156 CGAAGAAGAATTT-GATTAAGATGCCACGAAACGGTGACGTTCCGTTTACTCATGCTAAT 1214
|||||| ||| || | | |||||||| ||||||| ||||| ||||| || ||||| |||
Sbjct 1321 CGAAGAGGAACTTCG-TGGAGATGCCAGGAAACGGCGACGTACCGTTCACACATGCCAAT 1379
Query 1215 ATTAGTTTAGCTC-AACGTGAGCTT-GGTTATAAACCGACGACGGATTTGCAAACCGGTT 1272
||||| | ||| | || ||| || || ||||||||||| || |||||| ||||||| |
Sbjct 1380 ATTAGCTCAGCCCGAAA-TGAA-TTCGGGTATAAACCGACAACCGATTTGGAAACCGGGT 1437
Query 1273 TGAAGAAGTTTGTGAGATGGTAT 1295
|||||||||| || |||||||||
Sbjct 1438 TGAAGAAGTTCGTTAGATGGTAT 1460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67118128665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5