BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935484
Length=1217
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45320.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2023 0.0
> AT2G45320.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures;
EXPRESSED DURING: 10 growth stages; Has 45 Blast hits
to 45 proteins in 16 species: Archae - 0; Bacteria - 8; Metazoa
- 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr2:18684116-18686145 REVERSE
LENGTH=1283
Length=1283
Score = 2023 bits (1095), Expect = 0.0
Identities = 1173/1211 (97%), Gaps = 3/1211 (0%)
Strand=Plus/Plus
Query 10 ATACGGTATTAATGGGTTCCCGGAGAGATTATCGGAGCATGAGATCTTGTAGCGGATGGC 69
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 28 ATACGATATTAATGGGTTCCCGGAGAGATTATCGGAGCATGAGATCTTGTAGCGGATGGC 87
Query 70 GTCGAATTCTTTTACTTGTTCCTGTGCTCTTTCTTCTTCCTCATCTCTCGTCACTTCTTG 129
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||
Sbjct 88 GTCGAATTCTTTTACTTATTCCTGTGCTCTTTCTTCTTCCTCATCTCTCTTCACTTGTTG 147
Query 130 GTATTTCTTCGGATTCGGCTAAGAGGAACGATGCGCGAACCATTCCTAATAAGAAATTGG 189
| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 148 ATTTTTCTTCGGATTCGGCTACGAGGAACGACGCGCGAACCATTCCTAATAAGAAATTGG 207
Query 190 ATCACCTTGTGCTCGGTCCTGTAGCTGGACAAGGCTTGTCGGATCGATTGCATTGCCGAG 249
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 208 ATCACCTTGTGCTCGGTCCTGTAGCTGGACAAGGCTTGTCTGATCGATTTCATTGCCGAG 267
Query 250 GCACGAAGGCTCTGAACAAGACTCATGGTT---CTTCTCATGTGTCTGGTGCTGGAAATG 306
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 268 GCACGAAGGCTCTGAACAAGACTCATGGTTCAACTTCTCATGTGTCTGGTGCTGGAAATG 327
Query 307 GTGTTTCTTTTGTGACGGTGTTTACTGTTTATAATACGTCGCTCGGAAATGCGAAATCCT 366
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 328 GCGTTTCTTTTGTGACGGTGTTTACTGTTTATAATACGTCGCTCGGAAATGTGAAATCCT 387
Query 367 CCAATATGGTTTCTGTTGTTGGGAATGTTACCTACAGCAAGCCAGAGAGGTCAATGGCAG 426
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 388 CCAATCCGGTTTCTGTTGTTGGGAATGTTACCTACAGCAAGCCAGAGAGGTCAATGGCTG 447
Query 427 TTCTAAATGCATTCGCCTACTTCATTCAGGTGACTATGCCCAAGAGTAATGTTGTCATAT 486
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 448 TTCTAAATGCATTCGCCAACTTCATTCAGGTGACTATGCCCAAGAGCAATGTTGTCATAT 507
Query 487 TGACTGATCCAGCTTCTGATCTCTCCATCCAACAAAGCAATGTGATGGTACAGCCTGTTC 546
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 508 TGACTGATCCAGCTTCTGATCTCTCCATCCAACAAAGCAATGTGATATTACAGCCTGTTC 567
Query 547 AGGGTGATTATTCACGGGGTAACCTGATGCTTCAAAGAATCAGGTCTTACATTACCTTTC 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 AGGGTGATTATTCACGGGGTAACCTGATGCTTCAAAGAATCAGGTCTTACATTACCTTTC 627
Query 607 TTGAGATGAAGCTCGAGAAGAATGAGGGTGGGATAAACCACTATATCTTCACTGATTCTG 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 TTGAGATGAAGCTCGAGAAGAATGAGGGTGGGATAAACCACTATATCTTCACTGATTCTG 687
Query 667 ATATAGCTGTGGTTGACGACATCGGGGCTATATTTGACAAGCATCCAAGCTTTCATCTAG 726
|||||||||||||||||||| ||||| ||||||||||||||||| ||||||| |||||||
Sbjct 688 ATATAGCTGTGGTTGACGACGTCGGGACTATATTTGACAAGCATTCAAGCTTCCATCTAG 747
Query 727 CACTCACATTCAGGAACAATAAAGATCAGCCGCTGAATTCAGGATTTATAGCAGTGAGAG 786
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 748 CACTCACATTCAGGAACAATAAAGATCAGCCGTTGAATTCAGGATTTATAGCAGTGAGAG 807
Query 787 GCACACGTGAAGGGATCCTAAGGGCCAAAGTTTTTCTTGAAGAAGTCCTAAAAGCTTACA 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 GCACACGTGAAGGGATCCTAAGGGCCAAAGTTTTTCTTGAAGAAGTCCTAAAAGCTTACA 867
Query 847 AAACCAAATACATGAAAGCTTCGCGCATGCTTGGTGATCAGTTGGCTCTGGTTTGGGTTG 906
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 868 AAACCAAATACATGAAAGCTTCGCGCATGCTTGGTGATCAGTTGGCTCTGGTATCGGTTG 927
Query 907 TTAAATCTCATCCTTCTTTTGATGCAAAGAGATTAACAAAGCCACAAGCTTTCACACAAG 966
||||||||||| |||| ||||| ||||||||||| ||||||||||||||||||||| |||
Sbjct 928 TTAAATCTCATGCTTCCTTTGACGCAAAGAGATTCACAAAGCCACAAGCTTTCACAGAAG 987
Query 967 AAATAGCTGGAGCTTCAGTGTTATTTCTACCATGTGCTTTATACAACTGGACACCTCCTG 1026
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 988 AAATAGCTGGAGCTTCAGTGTTATTTCTACCATGTGCTCTATACAACTGGACACCTCCTG 1047
Query 1027 AAGGTGCTGGTCAGTTTCATGGCATGCCATTAGATGTCAAGATTGTTCACTTCAAAGGAT 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 AAGGTGCTGGTCAGTTTCATGGCATGCCATTAGATGTCAAGATTGTTCACTTCAAAGGAT 1107
Query 1087 CAAGAAAACGTTTAATGCTAGAGGCATGGAACTTCTACAAATCAACTTCAAACATTCCAG 1146
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1108 CAAGAAAACGTTTAATGCTCGAGGCATGGAACTTCTACAAATCTACTTCAAACATTCCAG 1167
Query 1147 ATATGTTGTGTCTTGTTCTAGGTAGTGGAAGAACTAAATACGATTTCTAATTGTTGACGA 1206
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1168 ATATGTTGTGTCTTGTTCTAGGTAGTGGAAGAACTAAATACGATTTCTGATTGTTGACGA 1227
Query 1207 TGACAACTCTG 1217
|||||||||||
Sbjct 1228 TGACAACTCTG 1238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59788849095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5