BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935487
Length=1270
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45350.1 | Symbols: CRR4 | Pentatricopeptide repeat (PPR) su... 1799 0.0
AT2G45880.1 | Symbols: BMY4, BAM7 | beta-amylase 7 | chr2:18878... 73.1 6e-12
> AT2G45350.1 | Symbols: CRR4 | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:18694816-18696657 REVERSE LENGTH=1842
Length=1842
Score = 1799 bits (974), Expect = 0.0
Identities = 1088/1144 (95%), Gaps = 4/1144 (0%)
Strand=Plus/Plus
Query 107 AGATGCAATTGCAGCATAGCGTCAAAACTGTTTGCTGAAATGCCTGAGAAGGACTTGATT 166
||||| | ||| | ||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 702 AGATGGAGTTG-A-CATAGCGTCTAAACTGTTTGCTGATATGCCTGAGAAGGACTTGATT 759
Query 167 TCATGGAACTCAATGATCGATGGATATGTAAAACACGGAAGAATCGAGGATGCTAAGGGT 226
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 760 TCGTGGAACTCAATGATAGATGGATATGTAAAACACGGAAGAATCGAAGATGCTAAGGGT 819
Query 227 TTATTTGATGTGATGCCGAGAAGAGATGTGGTTACTTGTGCTACCATGATTGATGGGTAT 286
||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 820 TTATTCGATGTGATGCCGAGAAGAGATGTAGTTACTTGGGCTACCATGATTGATGGGTAT 879
Query 287 GCAAAGTTAGGTTTTGTTCATCAGGCTAAGACTCTGTTTGACCAAATGCCTCTTAGAGAT 346
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 880 GCAAAGTTAGGTTTTGTTCATCACGCTAAGACTCTGTTTGACCAAATGCCTCATAGAGAT 939
Query 347 GTTGTGGCATATAATTCTATGATGGCTGGTTATGTTCAAAACAAGTGTCACATGGAAGCT 406
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 940 GTTGTGGCATATAATTCTATGATGGCTGGTTATGTTCAAAACAAGTATCACATGGAAGCT 999
Query 407 CTTGAAATATTTAACGACATGGAAAAGGAGAGTCACTTGTCACCCGATGAAACGACTTTG 466
||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1000 CTTGAAATATTTAGTGACATGGAAAAGGAGAGTCACTTGTTACCCGATGATACGACTTTG 1059
Query 467 GTAATCA-TTCTTTCTGCAATTGCTCAGCTTGGCCGATTATCGAAAGCCACCGATATGCA 525
||||| | |||| |||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1060 GTAAT-AGTTCTGCCTGCAATTGCTCAGCTTGGCCGATTATCCAAAGCCATAGATATGCA 1118
Query 526 TTTGTATATTGTGGAGAAACAATTCTATCTAGGTGGAAAACTCGGCGTTGCTCTCATTGA 585
|||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1119 TTTGTACATCGTGGAGAAACAATTCTATCTAGGTGGAAAACTCGGTGTTGCTCTCATTGA 1178
Query 586 TATGTATTCGAAATGCGGAAGCATACAACACGCCATGTTGGTTTTCGAGGGAATCGAAAA 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 TATGTATTCGAAATGCGGAAGCATACAACACGCCATGTTGGTTTTCGAGGGAATCGAAAA 1238
Query 646 CAAAAGCATTGATCACTGGAATGCTATGATTGGTGGGCTAGCTGTTCATGGTCTTGGAGA 705
||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || ||
Sbjct 1239 CAAAAGCATTGATCACTGGAATGCTATGATTGGTGGGCTCGCTATTCATGGTCTAGGGGA 1298
Query 706 ATCCGCATTCAATATGCTCTTGCAGATCGAGAGACTCTCCATAATACCAGATGATATCAC 765
||| |||||| |||||||||||||||| ||||||||||| ||| |||||| ||||||||
Sbjct 1299 ATCTGCATTCGATATGCTCTTGCAGATTGAGAGACTCTCTTTAAAACCAGACGATATCAC 1358
Query 766 CTTTGTTGGAGTTTTAAATGCTTGTAGCCACTCTGGATTAGTGAAGGAAGGCCTTCTCTG 825
||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 1359 CTTTGTTGGCGTTTTAAATGCTTGCAGCCACTCTGGGTTAGTAAAGGAAGGCCTTCTCTG 1418
Query 826 CTTTGAGCTCATGAGGAGAAAACACAAGATAGAACCAAGGTTGCAACACTATGGGTGTAT 885
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1419 CTTTGAGCTCATGAGGAGAAAACACAAGATAGAACCAAGATTGCAACACTATGGTTGTAT 1478
Query 886 GGTCGACATACTATCGAGATCCGGTAGTATAGAGCTAGCCAAAAACTTAATAGAGGAAAT 945
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1479 GGTAGACATACTATCGAGATCCGGAAGTATAGAGCTAGCCAAAAACTTAATAGAGGAAAT 1538
Query 946 GCCAATTGAGCCAAATGATGTCATATGGAGAACATTTCTCACCGCTTGTAGTCACCACAA 1005
||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1539 GCCTGTTGAGCCAAATGATGTCATATGGAGAACGTTTCTCACCGCTTGTAGTCACCACAA 1598
Query 1006 GGAGTTTGAAACGGGAGAGCTTGTCGCGAAACACCTTATTTTGCAGGCTGGCTATAACCC 1065
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1599 GGAGTTTGAAACGGGAGAGCTTGTCGCAAAACACCTTATTTTGCAGGCTGGATATAACCC 1658
Query 1066 GAGCTCATATGTGCTTCTCTCTAACATGTATGCTAGTTTTGGAATGTGGAAGGATGTTCG 1125
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1659 GAGCTCATATGTGCTACTCTCTAACATGTATGCTAGTTTTGGAATGTGGAAGGATGTTCG 1718
Query 1126 TAGAGTTAGAACGATGATGAAGGAAAGAAAGATAGAGAAAATTCCTGGATGTAGTTGGAT 1185
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1719 TAGAGTTAGAACGATGATGAAGGAAAGAAAGATAGAGAAAATTCCTGGTTGTAGTTGGAT 1778
Query 1186 TGAGCTCGATGGAAGAGTCCATGAGTTCTTTGTAGATAGCATTGAAGTTTCCAATACATT 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1779 TGAGCTCGATGGAAGAGTCCATGAGTTCTTTGTAGATAGCATTGAAGTTTCCAGTACATT 1838
Query 1246 GTAG 1249
||||
Sbjct 1839 GTAG 1842
> AT2G45880.1 | Symbols: BMY4, BAM7 | beta-amylase 7 | chr2:18878518-18882578
REVERSE LENGTH=2855
Length=2855
Score = 73.1 bits (39), Expect = 6e-12
Identities = 41/42 (98%), Gaps = 0/42 (0%)
Strand=Plus/Minus
Query 83 AGTGGCACCATGCTTCTTAAGTGTAGATGCAATTGCAGCATA 124
|||||||||||||||||||||||||||||||||||||| |||
Sbjct 2342 AGTGGCACCATGCTTCTTAAGTGTAGATGCAATTGCAGAATA 2301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62449477980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5