BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935494
Length=968
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60800.1 | Symbols: | DHHC-type zinc finger family protein ... 915 0.0
> AT3G60800.1 | Symbols: | DHHC-type zinc finger family protein
| chr3:22467173-22469592 REVERSE LENGTH=1556
Length=1556
Score = 915 bits (495), Expect = 0.0
Identities = 795/938 (85%), Gaps = 27/938 (3%)
Strand=Plus/Plus
Query 15 TTGAGTATGCATAGATCTGGTACAACAATGGCGTGGAACGTCTTCAAATTCTGTACAGCT 74
|||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 314 TTGACTATGCATAGATCTGGTACAACAATGGCGTGGAACGTATTCAAGTTCTGTACTGC- 372
Query 75 CT-ACGAGGACTCGGATCGATCATGATCCTTCTGGT-CTTAGGGGTTGTTGGTGTAACCT 132
|| |||||| || |||||||||||||||||| |||| ||| || ||||| ||||| || |
Sbjct 373 CTTACGAGGTCTTGGATCGATCATGATCCTTTTGGTTCTT-GGTGTTGTCGGTGTTACTT 431
Query 133 ATTACGCCGTCGTTTGGACCAATTATGGACCTGCACTATCAGATGGAGGTCTCGGTTCTC 192
||||||| ||||||| ||| |||||||| |||||||| || | || || || | |||||
Sbjct 432 ATTACGCTGTCGTTTTGACTAATTATGGTCCTGCACTCTCTCAAGGTGGCCTTGATTCTC 491
Query 193 TTGCTGCTTTTGCTAT-TATAATCCTTTTCCACTTTT-TGTTGGCAATGCTTTTGTGGAG 250
|||||||| | |||| | ||||||| ||||| ||| | |||||||||||||||||||
Sbjct 492 TTGCTGCTCTCACTATCT-TAATCCTCTTCCA-TTTCCTCCTGGCAATGCTTTTGTGGAG 549
Query 251 CTATTTCTCTGTTGTGTTTACTGATCCTGGTGTTGTGCCTCCTAATTGGAGGTTAGCTTC 310
||||||||| || || ||||||||||||||||||||||||||||||||||| | || |
Sbjct 550 CTATTTCTCAGTGGTTTTTACTGATCCTGGTGTTGTGCCTCCTAATTGGAGACCATCTAC 609
Query 311 AGACGAGGAACAACGAGGCGAGTCTGATCCGTTAAACAGTTTGGAGTTT-T-GCGTGTTA 368
|| || ||| | |||| || |||||||||||||| |||||||| ||| | | || |||
Sbjct 610 TGATGAAGAA-A--GAGGTGAATCTGATCCGTTAAATAGTTTGGACTTTGTTG-GT-TTA 664
Query 369 CAG-CCTGATTCTTC--C---AA-CCAAAGAACTCGGTTTTGTAGAAAATGCAATCAACC 421
|| || |||||||| | || || |||| |||||||||| | || ||||||||||
Sbjct 665 CAATCC-GATTCTTCTTCTTCAAACCCAAGAGTTCGGTTTTGTCGGAAGTGCAATCAAC- 722
Query 422 TAAA-CCTCCTCGTTGCCATCATTGCTCTGTTTGTGGTCGATGTGTGTTGAAAATGGACC 480
|||| ||| ||||||| |||||||| |||||||||||||| ||||||||||| ||||| |
Sbjct 723 TAAAACCTTCTCGTTGTCATCATTGTTCTGTTTGTGGTCGGTGTGTGTTGAAGATGGATC 782
Query 481 ACCATTGTGTTTGGGTTGTTAGCTGTGTCGGGGCACTTAATTATAAGTATTTTCTTCTTT 540
||||||||||||||||||||| |||||| || ||||| || |||||||||||||||||||
Sbjct 783 ACCATTGTGTTTGGGTTGTTAACTGTGTAGGAGCACTGAACTATAAGTATTTTCTTCTTT 842
Query 541 TCTTGCTT-TACACCTTTTTGGAAACAACTCTTGTGACTCTACTTCTCATGCCGCACTTT 599
||||| || ||||| ||||| || || || ||||||||| | |||| |||||||||||
Sbjct 843 TCTTG-TTCTACACATTTTTAGAGACGACCCTTGTGACTTTGGTTCTTATGCCGCACTTC 901
Query 600 ATAGCTTTCTTTAGCGATGAAGAGATACCTGGAACCCCAGGCACCCTTGCTACTACTTTT 659
|| || |||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 902 ATTGCATTCTTTAGTGATGAAGAAATACCTGGAACCCCAGGCACTCTTGCTACTACTTTT 961
Query 660 CTTGCATTTGTATTAAACCTGGCATTTGCTTTAAGTGTTATGGGTTTCTTAATCATGCAC 719
||||||||||| || ||| |||||||||| || || || |||||||||||||| |||||
Sbjct 962 CTTGCATTTGTTTTGAACTTGGCATTTGCGTTGAGCGTGATGGGTTTCTTAATTATGCAT 1021
Query 720 ATTTCGTTGGTTGCTGCCAATACCACAACTATAGAGGCATATGAGAAGAAAACAAGTCCA 779
||||| ||||| |||| |||||||||||||||||||||||||||||||||||| | | ||
Sbjct 1022 ATTTCCTTGGTAGCTGGCAATACCACAACTATAGAGGCATATGAGAAGAAAACCACTACA 1081
Query 780 AAATGGCCATATGACCTTGGTCGAAAGAAAAACTTTGAACAAGTATTTGGTATGGATAAA 839
||||||| |||||||| ||| |||||||||||||||||| |||||||| ||||||||
Sbjct 1082 AAATGGCGGTATGACCTCGGTAAAAAGAAAAACTTTGAACAGGTATTTGGAATGGATAAG 1141
Query 840 AGATACTGGCTGATTCCAGCCTACTCAGAAGAAGATTTAAGACGAATGCCGGAACTTCAA 899
||||||||| | || |||| ||| ||||||||||| |||| ||||||||||| || ||
Sbjct 1142 AGATACTGGTTAATCCCAGGATACACAGAAGAAGATCTAAGGCGAATGCCGGAGCTGCAG 1201
Query 900 GGACTCGAATACCCTTCCAAACCGGACTTCGATTCCCA 937
||||| ||||||||||| ||||| ||||| ||||||||
Sbjct 1202 GGACTTGAATACCCTTCGAAACCCGACTTTGATTCCCA 1239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47370800621
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5