BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935500
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45430.1 | Symbols: AHL22 | AT-hook motif nuclear-localized ... 1596 0.0
AT4G22810.1 | Symbols: | Predicted AT-hook DNA-binding family ... 189 4e-47
> AT2G45430.1 | Symbols: AHL22 | AT-hook motif nuclear-localized
protein 22 | chr2:18727561-18728935 FORWARD LENGTH=1375
Length=1375
Score = 1596 bits (864), Expect = 0.0
Identities = 958/1002 (96%), Gaps = 12/1002 (1%)
Strand=Plus/Plus
Query 2 TTTACTTTTGA-ATCAAGAAATGGATCAGGTCTCTCGCTCTCTTCCTCCACCTTTTCTCT 60
||| ||||| | |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 268 TTTGCTTTTTATATCAAGTAATGGATCAGGTCTCTCGCTCTCTTCCTCCACCTTTTCTCT 327
Query 61 CAAGAGATCTCCATCTTCACCCGCACCATCAATTCCAGCAT---CAGCAGCAGCAGCAAC 117
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 328 CAAGAGATCTCCATCTTCACCCACACCATCAATTCCAGCATCAGCAGCAGCAGCAGCAAC 387
Query 118 AGAATCACGGCCACGATATCGACCAGCACCGAATCGGTGGCCTAAAACGTGACCGGGACG 177
||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || |
Sbjct 388 AGAATCACGGCCACGATATAGACCAGCACCGAATCGGTGGGCTAAAACGTGACCGAGATG 447
Query 178 CTGATATCGATCCCAACGAGCACTCTTCAGCCGGAAAAGATCAAAACACTCCTGGCTCCG 237
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 448 CTGATATCGATCCCAACGAGCACTCTTCAGCCGGAAAAGATCAAAGTACTCCTGGCTCCG 507
Query 238 GTGGAGAAAGCGGCGGCGGAGGAGGAGGAGACAATCATATCACGAGAAGGCCACGTGGCA 297
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 508 GTGGAGAAAGCGGCGGCGGAGGAGGAGGAGATAATCACATCACGAGAAGGCCACGTGGCA 567
Query 298 GACCAGCGGGATCCAAGAACAAACCAAAACCACCAATCATCATCACTCGAGACAGCGCAA 357
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 568 GACCAGCGGGATCTAAGAACAAACCAAAACCGCCAATCATCATCACTCGAGACAGCGCAA 627
Query 358 ACGCTCTCAAATCTCATGTCATGGAAGTAGCAAACGGATGTGACGTCATGGAAAGTGTCA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 ACGCTCTCAAATCTCATGTCATGGAAGTAGCAAACGGATGTGACGTCATGGAAAGTGTCA 687
Query 418 CCGTCTTCGCTCGCCGTCGCCAACGTGGCATCTGCGTTTTGAGCGGAAACGGCGCCGTTA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 CCGTCTTCGCTCGCCGTCGCCAACGTGGCATCTGCGTTTTGAGCGGAAACGGCGCCGTTA 747
Query 478 CCAACGTTACCATAAGACAACCAGCTTCAGTACCTGGTGGTGGCTCATCTGTCGTTAACT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 CCAACGTTACCATAAGACAACCAGCTTCAGTACCTGGTGGTGGCTCATCTGTCGTTAACT 807
Query 538 TACACGGACGTTTCGAGATTCTTTCTCTCTCGGGATCTTTCCTTCCCCCTCCGGCTCCAC 597
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 808 TACACGGACGTTTCGAGATTCTTTCTCTCTCGGGATCATTCCTTCCTCCTCCGGCTCCAC 867
Query 598 CAGCTGCGTCAGGACTAACGATTTACTTAGCCGGTGGTCAGGGACAGGTCGTTGGAGGAA 657
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 868 CAGCTGCGTCAGGTCTAACGATTTACTTAGCCGGTGGTCAGGGACAGGTTGTTGGAGGAA 927
Query 658 GCGTGGTTGGTCCACTCATGGCTTCAGGACCAGTAGTGATTATGGCTGCTTCGTTTGGGA 717
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 928 GCGTGGTTGGTCCACTCATGGCTTCAGGACCTGTAGTGATTATGGCAGCTTCGTTTGGAA 987
Query 718 ACGCTGCGTATGAGAGATTGCCGTTAGAGGAAGATGATCAGGAAGAGCAAACGGCTGGAG 777
||||||||||||||||| ||||||| |||||||| ||||| ||||||||||| |||||||
Sbjct 988 ACGCTGCGTATGAGAGACTGCCGTTGGAGGAAGACGATCAAGAAGAGCAAACAGCTGGAG 1047
Query 778 CGGTTGCCAATAATATCGATGGAAACGCAACGATGGGTGGTGGGACGCAAACGCAGACTC 837
||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 1048 CGGTTGCTAATAATATCGATGGAAACGCAACAATGGGTGGTGGAACGCAAACGCAAACTC 1107
Query 838 AGACGCAGCAGCAGCAGCAACAACAACAACAGTTGATGCAAGATCCGACGTCGTTTATAC 897
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1108 AGACGCAGCAGCAACAGCAACAACA------GTTGATGCAAGATCCGACGTCGTTTATAC 1161
Query 898 AAGGGTTGCCTCCGAATCTTATGAATTCTGTTCAATTGCCAGCTGAAGCTTATTGGGGAA 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 AAGGGTTGCCTCCGAATCTTATGAATTCTGTTCAATTGCCAGCTGAAGCTTATTGGGGAA 1221
Query 958 CTCCGAGACCATCTTTCTAAATCGCGGaaaaaaaaaaCAAGT 999
|||||||||||||||||||||||||| || |||||| |||||
Sbjct 1222 CTCCGAGACCATCTTTCTAAATCGCG-AAGAAAAAA-CAAGT 1261
> AT4G22810.1 | Symbols: | Predicted AT-hook DNA-binding family
protein | chr4:11984140-11985702 FORWARD LENGTH=1563
Length=1563
Score = 189 bits (102), Expect = 4e-47
Identities = 380/510 (75%), Gaps = 35/510 (7%)
Strand=Plus/Plus
Query 261 GGAGGAGA-CAATCATATCACGAGAAGGCCACGTGGCAGACCAGCGGGATCCAAGAACAA 319
|||||||| | |||| || || ||||| ||| | || |||||||||||||||||||||||
Sbjct 584 GGAGGAGATC-ATCAGATGACAAGAAGACCAAGAGGAAGACCAGCGGGATCCAAGAACAA 642
Query 320 ACCAAAACCACCAATCATCATCACTCGAGACAGCGCAAACGCTCTCA-AATCTCATGTCA 378
|||||||||||| || |||||||| || |||||||||||||| || | || | || || |
Sbjct 643 ACCAAAACCACCGATTATCATCACACGGGACAGCGCAAACGCGCTTAGAACC-CACGTGA 701
Query 379 TGGA-AGTAGCAAACGGATGTGACGTCA-TGGAAAGTGTCACCG-TCTTCGCTCGCCGTC 435
|||| | | | | | || || ||| | | | ||||| || || | || || || | |
Sbjct 702 TGGAGA-TCGGAGATGGCTGCGACTT-AGTCGAAAGCGTTGCCACTTTT-GCACGAAGAC 758
Query 436 GCCAACGTGGCATCTGCGTTTTGAGCGGAAAC-GGCGCCGTTACCAACGTTACCATAAGA 494
||||||| ||| | |||||| ||||||| | | || ||||| ||||| || ||| |
Sbjct 759 GCCAACGCGGCGTTTGCGTTATGAGCGGTA-CTGGAAATGTTACTAACGTCACTATACGT 817
Query 495 CAACCAGC-T-TCAGTACCTGGTGGTGGCTCATCTGTCGTTAA-CTTACACGGACGTTTC 551
|| || | | ||| | ||| | |||||| || |||| ||| |||||| | |||
Sbjct 818 CAGCCTGGATCTCA-T-CCTTCTCCTGGCTCG---GTAGTTAGTCTT-CACGGAAGGTTC 871
Query 552 GAGATTCTTTCTCTCTCGGGATCTTTCCTTCCC-CCTCCGGCTCCACC-AGCTGCGTCAG 609
|||||||| |||||||| |||||||| || ||| ||||||||||| || | | || | |
Sbjct 872 GAGATTCTATCTCTCTCAGGATCTTTTCT-CCCTCCTCCGGCTCCTCCTA-CAGCCACCG 929
Query 610 GACTAAC-GATTTACTTAGCCGGTGGTCAGGGACAGGTCGTTGGAGGAAGCGTGGTTGGT 668
|| | | | ||||| | || || || || |||||||| |||||||||||||| ||||||
Sbjct 930 GATTGAGTG-TTTACCTCGCTGGAGGACAAGGACAGGTGGTTGGAGGAAGCGTAGTTGGT 988
Query 669 CCACTC--ATG-GCTTCAGGACCAGTAGT-GATTATGGCTGCTTCGTTTGGGAACGCTGC 724
|| | ||| ||| || || || || | | |||||||| || ||| | || || ||
Sbjct 989 CCGTTGTTATGTGCT---GGTCCTGTCGTTG-TCATGGCTGCGTCTTTTAGCAATGCGGC 1044
Query 725 GTATGAGAGATTGCCGTTAGAGGAAGATGA 754
||| || || ||||| ||||||||||||||
Sbjct 1045 GTACGAAAGGTTGCCTTTAGAGGAAGATGA 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48928059178
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5