BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935507
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45490.1 | Symbols: AtAUR3, AUR3 | ataurora3 | chr2:18747639... 1459 0.0
AT2G23940.1 | Symbols: | Protein of unknown function (DUF788) ... 60.2 3e-08
> AT2G45490.1 | Symbols: AtAUR3, AUR3 | ataurora3 | chr2:18747639-18749075
REVERSE LENGTH=917
Length=917
Score = 1459 bits (790), Expect = 0.0
Identities = 867/904 (96%), Gaps = 5/904 (1%)
Strand=Plus/Plus
Query 7 AGTACGATGATCGGAAAAATGAGTAAGAGATCGACAGAATCTGACGCTGG-AGATACCGA 65
|||||| ||||||||||||||||||||| ||||||||||||||||||||| | |||| ||
Sbjct 14 AGTACGGTGATCGGAAAAATGAGTAAGAAATCGACAGAATCTGACGCTGGCA-ATACTGA 72
Query 66 GAAGCAATGGTCCCTGGCAGATTTCGAGATCGGGGGACCACTTGGAAAAGGCAAATTTGG 125
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 73 GAAGCAATGGTCCCTGGCAGATTTCGAGATCGGGAGACCACTTGGAAAAGGCAAATTTGG 132
Query 126 TAGAGTCTATCTCGCCCGAGAAGCCAAGAGTAAGTACATAGTGGCGCTGAAAGTGATATT 185
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 133 CAGAGTCTATCTCGCCCGAGAAGCCAAGAGCAAGTACATAGTGGCGCTGAAAGTCATATT 192
Query 186 CAAGGAGCAGATTGAGAAGTATAAAATTCATCATCAGCTTAGGAGAGAAATGGAGATCCA 245
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 CAAGGAACAGATAGAGAAGTATAAAATTCATCATCAGCTTAGGAGAGAAATGGAGATCCA 252
Query 246 AACGAGTTTAAGCCACCCAAATATCTTGCGTCTCTTCGGTTGGTTCGATGACGATGAGCG 305
|||||||||||| |||||||||||||||||||| || ||||||||| ||||| ||||| |
Sbjct 253 AACGAGTTTAAGGCACCCAAATATCTTGCGTCTTTTTGGTTGGTTCCATGACAATGAGAG 312
Query 306 GATTTTCTTGATTCTTGAGTATGCTCATGGTGGTGAGCTCTATGGTGTGCTCAAAAAGAA 365
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 313 GATTTTCTTGATTCTCGAGTATGCTCATGGTGGTGAGCTCTATGGTGTGCTCAAACAGAA 372
Query 366 TGGTCATCTTACCGAACAACAAGCCGCCACTTACATTGCAAGTCTCAGTCAGGCACTGGC 425
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 TGGTCATCTTACTGAACAACAAGCCGCCACTTACATTGCAAGTCTCAGTCAGGCACTGGC 432
Query 426 CTATTGTCATGGAAAATGTGTGATTCACAGAGACATCAAACCTGAAAATTTGTTGCTCGA 485
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 433 CTATTGTCATGGCAAATGTGTGATTCATAGAGACATCAAACCTGAAAATTTGTTGCTCGA 492
Query 486 TCATGAGGGGAGATTGAAAATTGCTGACTTTGGATGGTCAGTGCAATCAAGTAACAAGAG 545
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 493 TCATGAGGGGAGATTGAAAATTGCTGACTTTGGATGGTCAGTTCAGTCAAGTAACAAGAG 552
Query 546 GAAAACAATGTGTGGAACCTTAGATTACTTGGCACCTGAGATGGTAGAAAATAGAGATCA 605
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 553 GAAAACAATGTGTGGAACCTTGGATTACTTAGCACCTGAGATGGTAGAAAATAGAGATCA 612
Query 606 CGATTATGCAGTTGATAACTGGACTTTAGGCATACTGTGTTACGAGTTTCTCTACGGTAA 665
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 613 TGATTATGCAGTTGATAACTGGACCTTAGGCATACTGTGTTACGAGTTTCTCTACGGTAA 672
Query 666 CCCTCCATTCGAAGCCGAGAGTCAAAAAGATACATTCAAGAGAATTCTTAAGATTGATCT 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 CCCTCCATTCGAAGCCGAGAGTCAAAAAGATACATTCAAGAGAATTCTTAAGATTGATCT 732
Query 726 TAGTTTTCCTCTTACACCGAATGTTTCAGAAGAAGCCAAAAATCTTATCAGTCAGCTTCT 785
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 GAGTTTTCCTCTTACACCGAATGTTTCAGAAGAAGCCAAAAATCTTATCAGTCAGCTTCT 792
Query 786 TGTTAAGGATCCCTCAAAACGACTCTCCCTTGAGAAGATCATGCAACATCCGTGGATTGT 845
||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 793 TGTTAAGGATCCCTCCAAACGACTCTCTATTGAGAAGATCATGCAACATCCATGGATTGT 852
Query 846 CAAGAACGCAGATCCGAAAGGTGTGTGTGCCTCAATTGATGTTTGATGCTATTCTC-CC- 903
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||
Sbjct 853 CAAGAACGCAGATCCGAAAGGTGTGTGTGCCTCAATTGATATTTGATG-TATTCTCTCCC 911
Query 904 AATC 907
||||
Sbjct 912 AATC 915
> AT2G23940.1 | Symbols: | Protein of unknown function (DUF788)
| chr2:10183966-10185331 FORWARD LENGTH=989
Length=989
Score = 60.2 bits (32), Expect = 3e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 834 TCCGTGGATTGTCAAGAACGCAGATCCGAAAG 865
||||||||||||||||||||||||||||||||
Sbjct 51 TCCGTGGATTGTCAAGAACGCAGATCCGAAAG 82
Score = 56.5 bits (30), Expect = 4e-07
Identities = 34/36 (94%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 778 CAGCTTCTTGTTAAGGATCCCTCAAAACGACTCTCC 813
|||||||||||||||||||||||||||| ||| |||
Sbjct 18 CAGCTTCTTGTTAAGGATCCCTCAAAACAACTTTCC 53
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44557688389
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5