BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935518
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45600.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1557 0.0
> AT2G45600.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr2:18789588-18790952 FORWARD LENGTH=1365
Length=1365
Score = 1557 bits (843), Expect = 0.0
Identities = 967/1026 (94%), Gaps = 12/1026 (1%)
Strand=Plus/Plus
Query 9 TCTCTCAAGCATCCATGGAAGCTCCTCCACCTTCAAGCGATCCATACAAGTTCCTCAACA 68
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 TCTCTGAAGCATCCATGGAAGCTCCTCCACCTTCAAGCGATCCATACAAGTTCCTCAACA 257
Query 69 TTACACTTAACTCAGATGGATCTCTCACTAGACACCGTGAGTTCCCCAAATTGCCCCCAA 128
|||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct 258 TTACACTTAACTCAGATGGATCTCTCACCAGACACCGTGATTTCCCCAAACTGCCCCCAA 317
Query 129 CGGAGCAATCCAAAGACATCCCATTAAACCAAACCAACAATACCTTCATCCGAATTTTCA 188
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 318 CAGAGCAATCCAAAGACATACCATTAAACCAAACCAACAATACCTTCATCCGAATCTTCA 377
Query 189 AGCCCCGGAATATTCCGCCGGAATCCAAACTCCCGATCCTCGTTTACTTCCACGGCGGCG 248
|||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 378 AGCCACGGAATATTCCGCCGGAATCCAAACTTCCGATCCTCGTTTACTTTCACGGCGGTG 437
Query 249 GGTTTATCCTCTACAGCGCCGCTTCCGCTCCTTTCCATGAATCTTGCACCAAAATGGCTG 308
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 438 GATTTATCCTCTACAGCGCCGCTTCAGCTCCTTTCCATGAATCTTGCACCAAAATGGCTG 497
Query 309 ATCGTCTTCAAACCATAATCCTCTCCGTCGAATACCGTCTAGCTCCCGAACACCGTCTCC 368
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 ATCGTCTTCAAACTATAATCCTCTCCGTCGAATACCGTCTAGCTCCCGAACACCGTCTCC 557
Query 369 CGGCGGCGTACGAAGACGCCGTCGAAGC-AGTCTTATGGCTCCGCGATCAAGCTCGTGGC 427
|||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||
Sbjct 558 CGGCGGCGTACGAAGACGCCGTCGAAGCTA-TCTTATGGCTCCGTGATCAAGCTCGTGG- 615
Query 428 GC-AATCAACGGTGGCGATTGCGACACGTGGTTAAAAGACGGTGTCGATTTCTCGAAATG 486
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 GCCAATCAACGGTGGTGATTGCGACACGTGGTTAAAAGACGGTGTCGATTTCTCGAAATG 675
Query 487 TTTCGTAATGGGTTCGAGCTCCGGAGGAAATATCGTCTACAACGTCGCGTTGCGTGTGGT 546
| ||| |||||||| ||||| ||||||||||| ||||||||||| ||||||||||| ||
Sbjct 676 CTACGTCATGGGTTCAAGCTCTGGAGGAAATATTGTCTACAACGTGGCGTTGCGTGTAGT 735
Query 547 CGACACAGATCTCACTCCTGTTAAGATCCAAGGGCTGATAATGAACCAAGCTTTCTTCGG 606
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 TGACACAGATCTTTCTCCTGTTAAGATCCAAGGGCTGATAATGAACCAAGCTTTCTTCGG 795
Query 607 TGGCGTTGAACCGTCGGATTCTGAATCACGGCTTAAAGACGATAAGATCTGTCCGTTACC 666
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 796 TGGCGTTGAGCCGTCGGATTCTGAGTCACGGCTTAAAGACGATAAGATCTGTCCGTTACC 855
Query 667 AGCTACTCACTTGTTATGGTCGCTTTGTTTACCGGACGGTGTAGATCGTGACCACGTGTA 726
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 856 AGCTACTCACTTGTTGTGGTCACTTTGTTTACCGGACGGTGTAGATCGTGACCACGTGTA 915
Query 727 CAGCAATCCGATTAAGAGCAGTGGGCCCCAGGAAAAGGAGAAGATGGGACGTTTTCCGTC 786
||| ||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 916 CAGTAATCCAATTAAGAGCAGTGGGCCTCAGGAAAAAGATAAGATGGGACGTTTTCCGTC 975
Query 787 GACTCTTATTAACGGTTACGGTGGAGATCCGTTAGTGGATCGTCAGAGACACGTGGCGGA 846
||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 976 GACTCTTATCAACGGTTACGGTGGGGATCCTTTAGTGGATCGTCAGAGACACGTGGCGGA 1035
Query 847 GATGCTTAA-GGCCCGTGGAGTGCACGTGGAGACGAGGTTTGATAAAGATGGGTTCCATG 905
|||| |||| || |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1036 GATG-TTAAAGGGACGTGGAGTTCACGTGGAGACGAGGTTTGATAAAGATGGGTTTCATG 1094
Query 906 CTTGTGAGTTGTTTGATGGGAACAAAGCTAAGGCCTTGTACGAAACCGTTGAGGCCTTTA 965
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1095 CTTGTGAGTTGTTTGATGGGAACAAAGCTAAGGCCCTGTACGAAACCGTTGAGGCCTTTA 1154
Query 966 TGAAGAGTTGTTCATCAACTGGCCCATCG-CC--C---AACATGTAGCAATCCGATCTAA 1019
||||||||||||||||||||||||||||| || | ||||||||| | || |||||||
Sbjct 1155 TGAAGAGTTGTTCATCAACTGGCCCATCGTCCAACTCCAACATGTAGTAGTCTGATCTAA 1214
Query 1020 TCATGT 1025
||||||
Sbjct 1215 TCATGT 1220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284381147
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5