BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935521
Length=1037
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45630.2 | Symbols: | D-isomer specific 2-hydroxyacid dehyd... 1489 0.0
AT5G28310.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 246 3e-64
> AT2G45630.2 | Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase
family protein | chr2:18796000-18797089 FORWARD LENGTH=1017
Length=1017
Score = 1489 bits (806), Expect = 0.0
Identities = 917/971 (94%), Gaps = 6/971 (1%)
Strand=Plus/Plus
Query 50 CCACCGAGAATCTTCCACGTGTCCTCATCGTCAAACGTCCCGCCGCCATGGCTGTGTTGG 109
|||||||||| || |||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 50 CCACCGAGAAACTGCCACGTGTCCTCATCGTCAAACGTCCCGACGCCATGGCTGTGTTAG 109
Query 110 GCGACAGATTCGTGGCCTCCACCAAGTTTGAGATCTTGAAAGCCTTCGAGTCTCCGCTTC 169
||||| ||||||| |||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct 110 GCGACGGATTCGTCGCCTCCACCAAGTTCGAGATCCTCAAAGCCTTCGAGTCTCCGCTTC 169
Query 170 CTCTCCCTGCTTTCTTGGCCAATGACTCTCACTCCGTCTCCGCCGTTATAGCCCCGGTAG 229
|||| |||| ||||||||| || ||||| ||||| |||||||| |||||||||| ||||
Sbjct 170 CTCTTCCTGAATTCTTGGCCTATCACTCTGACTCCATCTCCGCCATTATAGCCCCTGTAG 229
Query 230 CTGCTCCCGTCACAGCCGATCTGATTCGCCTCCTCCCGAATCTTCGCTTGGTTGTTACTA 289
||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 230 CTGCTCCGGTCACAGCCGATCTGATTCGCATCCTCCCTAATCTTCGCTTGGTTGTTACTA 289
Query 290 CCAGCGCCGGCGTTGACCACGTTGACTTAGTTGAGTGTCGTCGTCGAGGCATCTCCGTCG 349
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 290 CCAGCGCCGGCGTTGACCATGTTGACTTAGTTGAGTGTCGTCGTCGAGGCATCTCCGTCG 349
Query 350 CCAACGCTGGCTCAAGCTTCTCAGAAGATGTCGCAGATACTGCCGTCGGTTTACTCATCG 409
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 350 CCAACGCTGGCTCAAGCTTCTCGGAAGATGTCGCAGATACTGCCGTCGGTTTACTCATCG 409
Query 410 ACGTTTTCCGCCGCATCTCTGCCGCCAATCGGTTCGTTAAGCAACGGTTTTGGCCACTCA 469
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 410 ACGTCTTCCGCCGCATCTCCGCCGCCAATCGGTTCGTTAAGCAACGGTTTTGGCCACTCA 469
Query 470 AAGGGGATTATCCCCTCGGTTCCAAGTTGGGGAGAAAGCGAATCGGAATCGTGGGACTAG 529
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 AAGGCGATTATCCTCTCGGTTCCAAGTTGGGGAGAAAGCGAATCGGAATCGTGGGACTAG 529
Query 530 GAAGCATTGGCTCGAAGGTAGCTACGAGGCTCGA-GCCCTTTGGTTGCCAAATTTCATAT 588
|||||||||||||||| ||||| || |||||||| ||| |||||||||||||||||||||
Sbjct 530 GAAGCATTGGCTCGAAAGTAGCGACAAGGCTCGACGCC-TTTGGTTGCCAAATTTCATAT 588
Query 589 AGCTCAAGAAACCA-AAAACCATATGATGTTCCATATCATTATTACATGGATATAGAGGA 647
|||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 589 AGCTCAAGAAAC-AGAAAACCATATGATGTTCCATATCACTATTACATGGATATAGAGGA 647
Query 648 GATGGCAGCTAACAGTGATGCACTCATAATCTGTTGTGAATTGAATGAGAAGACTAT-GC 706
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 648 GATGGCAGCTAATAGTGATGCACTCATAATCTGTTGTGAATTGAATGAGAAGAC-ATTGC 706
Query 707 ATTTCATTAATAAAGATGTTCTTTCTGCTCTGGGAAAGCAAGGAGTGATCGTTAACGTCG 766
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 707 GTTTGATTAATAAAGATGTTCTTTCTGCTCTGGGAAAGCGAGGAGTGATCGTTAACGTGG 766
Query 767 CTCGTGGGGCTATAATCGATGAGGTAGAAATGGTGAGATGCTTGAGAGAAGGTGAGATTG 826
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 767 CTCGTGGGGCTATAATCGATGAGGAAGAAATGGTGAGATGTTTGAGAGAAGGTGAGATTG 826
Query 827 GTGGTGCTGGTTTGGATGTTTTTGAAGATGAGCCTAATGTTCCAAAGGAGCTTTTTGAAT 886
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 827 GTGGTGCTGGTTTGGATGTTTTTGAAGATGAGCCTAATGTTCCGAAGGAGCTTTTTGAAT 886
Query 887 TGGATAATGTTGTTTTCTCTCCACATTGTGCTTTTATGTCACTGGAAGGTCTTGAAGAAC 946
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 887 TGGATAATGTTGTTTTCTCTCCACATAGTGCTTTTATGACATTGGAAGGTCTTGAAGAAC 946
Query 947 TTGGGAAACTTTTAGTAGCGAATATTGAAGCTTTCCTCTCCAATAAACCTCTACTAACTC 1006
|||||||| || |||||| |||||||||||||||| |||||||||||||||| ||||||
Sbjct 947 TTGGGAAAGTTGTAGTAGGGAATATTGAAGCTTTCTTCTCCAATAAACCTCTTTTAACTC 1006
Query 1007 CTGTTCTTTGA 1017
|||||||||||
Sbjct 1007 CTGTTCTTTGA 1017
> AT5G28310.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr5:10300117-10301844 REVERSE LENGTH=702
Length=702
Score = 246 bits (133), Expect = 3e-64
Identities = 144/149 (97%), Gaps = 2/149 (1%)
Strand=Plus/Plus
Query 504 AAAGCGAATCGGAATCGTGGGACTAGGAAGCATTGGCTCGAAGGTAGCTACGAGGCTCGA 563
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 342 AAAGCGAATCGGAATCGTGGGACTAGGAAGCATTGGCTCGAAGGTAGCTACGAGGCTCAA 401
Query 564 GCCCTTTGGTTGCCAAATTTCATATAGCTCAAGAAACCA-AAAACCATATGATGTTCCAT 622
| ||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||
Sbjct 402 GGCCTTTGGTTGCCAAATTTCATATAGCTCAAGAAAC-AGAAAACCATATGCTGTTCCAT 460
Query 623 ATCATTATTACATGGATATAGAGGAGATG 651
|||||||||||||||||||||||||||||
Sbjct 461 ATCATTATTACATGGATATAGAGGAGATG 489
Score = 244 bits (132), Expect = 1e-63
Identities = 157/169 (93%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 850 GAAGATGA-GCCTAATGTTCCAAAGGAGCTTTTTGAATTGGATAATGTTGTTTTCTCTCC 908
||||| || | |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 535 GAAGA-GATGTCTAATGTTCCTAAGGAGCTTTTTGAATTGGATAATGTTGTTTTCTCTCC 593
Query 909 ACATTGTGCTTTTATGTCACTGGAAGGTCTTGAAGAACTTGGGAAACTTTTAGTAGCGAA 968
|||||||||||||||| || |||||||||||||||||||||||||| || |||||| |||
Sbjct 594 ACATTGTGCTTTTATGACATTGGAAGGTCTTGAAGAACTTGGGAAAGTTGTAGTAGGGAA 653
Query 969 TATTGAAGCTTTCCTCTCCAATAAACCTCTACTAACTCCTGTTCTTTGA 1017
||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 654 TATTGAAGCTTTCTTCTCCAATAAACCTCTTTTAACTCCTGTTCTTTGA 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50836956764
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5