BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935522

Length=500
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G45640.1 | Symbols: SAP18, ATSAP18 | SIN3 associated polypep...   717    0.0  


> AT2G45640.1 | Symbols: SAP18, ATSAP18 | SIN3 associated polypeptide 
P18 | chr2:18799610-18801383 REVERSE LENGTH=790
Length=790

 Score =  717 bits (388),  Expect = 0.0
 Identities = 465/501 (93%), Gaps = 9/501 (2%)
 Strand=Plus/Plus

Query  5    gagagaaaaagagaaaaagaTGGCTGAAGCAGCGAGAAGACATGGTGGTGGGAGACCATT  64
            |||||||||||||    ||||||||||||||||||||||||| |||||||||||||||||
Sbjct  46   GAGAGAAAAAGAG----AGATGGCTGAAGCAGCGAGAAGACAAGGTGGTGGGAGACCATT  101

Query  65   ACCGCCACCTCCGAGAGGCGTTAA-C--CAACCTCCTCGCCCTAAACCTGAACCTGTCGA  121
            |||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||
Sbjct  102  ACCGCCACCTCCGAGAGGCGTTAACCAACAACCTCCTCGCCCTAAACCTGAACCTGTCGA  161

Query  122  TCGTGAAAAGACATGTCCCCTACTTCTTCGTGTTTTCACCAAGAGTGGTGGTCATCATGC  181
            ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct  162  TCGTGAAAAGACATGTCCCCTTCTTCTTCGTGTTTTCACCAAGAGTGGTGGTCATCATAC  221

Query  182  TAATGAAGATTATGCTGTGAGAGGCAAAGAACCAAAAGATGAAGTTCAAATCTACACTTG  241
            || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  222  TAGTGAAGATTATGCTGTGAGAGGCAAAGAACCAAAGGATGAAGTTCAAATCTACACTTG  281

Query  242  GAAAGATGCCACTCTCCGCGAGTTAACCGATTTGGTGAAAGAAGTTTCTGTAGCAGCTAG  301
            ||||||||||| ||| |||||| |||| |||||||| |||||||||||||||||||||||
Sbjct  282  GAAAGATGCCAGTCTTCGCGAGCTAACAGATTTGGTTAAAGAAGTTTCTGTAGCAGCTAG  341

Query  302  GAGAAGGAATGCAAGATTGTCTTTTGCGTTTGTTTATCCTGACAAGCAGGGTCGCTTTAC  361
            |||||||||||| ||||||||||||||||||||||||||| ||||  | ||| ||| || 
Sbjct  342  GAGAAGGAATGCTAGATTGTCTTTTGCGTTTGTTTATCCTAACAATAAAGGTGGCTATAA  401

Query  362  TATGAGAGAGGTTGGGCAGACTATGTCTTTTCCGAACCGAAAACAACCAGATGACAGTAA  421
            | |||||||||||||| |||| ||| ||| ||| ||||||||||||||||||||||||||
Sbjct  402  TGTGAGAGAGGTTGGGGAGACGATGGCTTATCCAAACCGAAAACAACCAGATGACAGTAA  461

Query  422  AACGCTTTCCGACCTTAGGTTTGAGATTGGAGATTATCTGGATGTGGCAATTTACTAGGA  481
            |||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct  462  AACGCTTTCCGAACTTCCGTTTGAGATTGGAGATTATCTGGATGTGGCAATTTACTAGGA  521

Query  482  GGTTTCTGTTTC--GTTAAGT  500
            ||||||||||||  |||||||
Sbjct  522  GGTTTCTGTTTCTTGTTAAGT  542



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23861219825


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5