BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935542
Length=782
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45790.1 | Symbols: ATPMM, PMM | phosphomannomutase | chr2:1... 1286 0.0
> AT2G45790.1 | Symbols: ATPMM, PMM | phosphomannomutase | chr2:18855775-18858018
FORWARD LENGTH=1107
Length=1107
Score = 1286 bits (696), Expect = 0.0
Identities = 739/760 (97%), Gaps = 2/760 (0%)
Strand=Plus/Plus
Query 20 CAATGGCGGCGAAAAAACCCGGAGTGATCGCTTTGTTCGACGTCGACGGTACTCTCACAG 79
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 100 CAATGGCGGCGAAAATTCCCGGAGTGATCGCTTTGTTCGACGTCGACGGTACTCTCACAG 159
Query 80 CTCCAAGGAAGGAAGCTACTCCTGAATTGCTCGATTTTATCCGAGAATTGCGCAAGGTCG 139
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 160 CTCCAAGGAAGGAAGCTACTCCAGAATTGCTCGATTTTATCCGAGAATTGCGAAAGGTCG 219
Query 140 TCACTATTGGAGTCGTCGGTGGATCTGATCTAAGCAAGATATCTGAGCAGCTTGGGAAAA 199
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 220 TCACTATTGGAGTCGTCGGTGGATCTGATCTAAGTAAGATATCTGAGCAGCTTGGCAAAA 279
Query 200 CAGTCACAAACGACTATGATTATTGCTTCTCTGAGAATGGTCTTGTTGCCCATAAAGATG 259
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 280 CAGTCACAAACGACTATGATTATTGTTTCTCTGAGAATGGTCTTGTCGCCCATAAAGATG 339
Query 260 GGAAATCCATTGGAGTTCAGAGCCTGAAGCTGCACCTTGGAGAAGATAAACTCAAGGAGT 319
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 340 GGAAATCCATTGGAATTCAGAGCCTGAAGCTGCACCTTGGAGACGATAAACTCAAGGAGT 399
Query 320 TGATAAATTTCACGCTGCACTACATTGCAGACTTGGATATTCCAATTAAGAGGGGAACAT 379
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 400 TGATAAATTTCACGCTGCACTACATTGCAGACCTGGATATTCCAATTAAGAGGGGAACAT 459
Query 380 TTATTGAATTCCGAAATGGAATGCTCAATGTATCACCCATTGGCCGCAACTGCAGCCAAG 439
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 460 TTATTGAATTCCGAAATGGAATGCTCAATGTATCACCCATTGGTCGCAACTGCAGCCAAG 519
Query 440 AAGAAAGAGATGAATTTGAGAGATATGATAAGGTTCAAAACATCCGACCAAAGATGGTAG 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 AAGAAAGAGATGAATTTGAGAGATATGATAAGGTTCAAAACATCCGACCAAAGATGGTAG 579
Query 500 CTGAACTTCGTGAGCGGTTTGCACATCTTAACCTTACTTTCTCAATTGGAGGACAGATAA 559
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 580 CTGAACTTCGTGAGCGGTTTGCACATCTTAACCTTACTTTCTCAATTGGGGGACAGATAA 639
Query 560 GCTTCGATGTCTTCCCTAAAGGTTGGGATAAGACTTACTGCTTGCAATACCTCGAGGAAT 619
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 640 GCTTCGATGTCTTCCCTAAAGGTTGGGATAAGACTTACTGCTTGCAATACCTCGAGGACT 699
Query 620 TCAATGAAATCCATTTCTTCGGTGACAAGACCTATGAGGGTGGAAACGATTATGAAATCT 679
||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 700 TCAGTGAAATCCATTTCTTCGGTGACAAGACCTATGAGGGTGGAAATGACTATGAAATCT 759
Query 680 ATGAATCACCAAAAACAATTGGCCATTCAGTTACGAGTCCAGATGACACAATGGCAAAAT 739
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 760 ATGAATCACCAAAAACAATTGGCCATTCAGTTACGAGTCCAGATGACACAGTGGCAAAAT 819
Query 740 GCAAGGCTCTGTTCATGTCTTGAAACACAA-TCCATCTCA 778
|||||||||||||||||||||||||||| | || ||||||
Sbjct 820 GCAAGGCTCTGTTCATGTCTTGAAACACTACTC-ATCTCA 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38027249279
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5