BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935552
Length=323
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45880.1 | Symbols: BMY4, BAM7 | beta-amylase 7 | chr2:18878... 307 4e-83
> AT2G45880.1 | Symbols: BMY4, BAM7 | beta-amylase 7 | chr2:18878518-18882578
REVERSE LENGTH=2855
Length=2855
Score = 307 bits (166), Expect = 4e-83
Identities = 200/215 (93%), Gaps = 7/215 (3%)
Strand=Plus/Plus
Query 111 GCCAAGCCTTTGCTTCACACACTCCTCTTTCTCCCAGACACGCTCGAGCGCTACACACGC 170
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 GCCAAGCCTTAGCTTCACACACTCCTCTTTCTCTCAGACACGCTCGAGCGCTACACACGC 60
Query 171 GTGAAAGCCTCGTCTTCCAATTCTCACGCTGCACGCTCCTTCACGCGCCTT-CTCTATCT 229
| ||||| |||||||||||| | |||||||||||||||||||||||| ||| ||| ||||
Sbjct 61 GCGAAAG-CTCGTCTTCCAA-T-TCACGCTGCACGCTCCTTCACGCG-CTTCCTCCATCT 116
Query 230 CACGGCCAGATCCGCCCT-TTTTCACCCGCCGGAGATCTACCGTCTTCTTCTCCTCTCTC 288
|||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 117 CACGGCCAGATCCG-CCTCTTTTCACCCGCCGGAGATCCACCGTCTTCTTCTCCTCTCTC 175
Query 289 TTGGTTTCGCTGACGGCGACAGACTGGGAATCCTT 323
||||||||||||||||||||||| ||||| ||||
Sbjct 176 TTGGTTTCGCTGACGGCGACAGAGGGGGAAACCTT 210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15030056951
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5