BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935559
Length=1099
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45940.1 | Symbols: | Protein of unknown function (DUF295) ... 1749 0.0
AT4G16080.1 | Symbols: | Protein of unknown function (DUF295) ... 717 0.0
AT2G45930.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 182 8e-45
> AT2G45940.1 | Symbols: | Protein of unknown function (DUF295)
| chr2:18903013-18904325 FORWARD LENGTH=1222
Length=1222
Score = 1749 bits (947), Expect = 0.0
Identities = 1047/1097 (95%), Gaps = 0/1097 (0%)
Strand=Plus/Plus
Query 3 ACCACCAACCCTTACATGATGTATTGTGTCACCTATTGTGGTGTAGCCCCAGAGGCCGGT 62
||||||||||||||| ||||||||| ||||||||||| || || ||||||| ||||||||
Sbjct 2 ACCACCAACCCTTACTTGATGTATTATGTCACCTATTCTGATGAAGCCCCACAGGCCGGT 61
Query 63 GCAATGACAGAGCTCCGCATGTTTGACCCGGCCAAGGAAGAGTATTTTACCGTCCGTGAT 122
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 62 GCAATGACAGAGCTCCGCATGTTTGACCCGGCCAAGGAAGAGTATTTCACCGTCCATGAT 121
Query 123 AAGCCACTTACCAAAGAGTTGGTTACGTCGAGGCTGGTGGGAAGTTCCCATGGTTGGGGA 182
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 122 AAGCCACTTCCCAAAGAGTTGGTTAAGTCGAGGCTGGTGGGAAGTTCCCATGGTTGGGGA 181
Query 183 GTTTTTCTTGGCTCCCCTAATTCCATACTAATTAGCGACTACTGCAATCCATCGAGCTCC 242
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 182 GTTTTTCTTGGCTCCCCTAATTCCATACTAATTAGCGACTACTGCAATCCCTCCAGCTCC 241
Query 243 AAATCAAACCCCAAGATGATCCCTCTGCCTCCTCGAAGTTATGAATACTCTTGTCAAAAT 302
|||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||
Sbjct 242 AAATCAAACCCCAAGATGATCCCTCTGCCTCCACGGAGTTATGAACACTCTTGTCAAAAT 301
Query 303 GAATTGGTAAGTGGCGTGGCAATGTCCTCTTCTCCTGAAGAAGAAGACTTCGTTATCGCT 362
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 302 GAATTGGTTAGTGGCGTGGCAATGTCCTCTTCTCCTGAAGAAGAAGACTTCGTTATGGCT 361
Query 363 GTCAAGTTCACGGGACGTCGGGTGAGTATATATAGGCCCGGTCAACACCGTAAGGGGAAC 422
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 362 GTCAAGTTCACGGGACGTCGGGTGAGTATATACAGGCCCGGTCAACATCGTAAGGGGAAC 421
Query 423 CACCGCTTTTCGTCTACTGAATTATTCGATTATTTTGAACAAGCCAACTTGATGTATTCC 482
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 422 CACCGCTTTTCGTCTACTGAACTGTTCGATTATTTTGAACAAGCCAACTTGATGTATTCC 481
Query 483 AAGAGAGATCAAAGGTTCTACATGCCAAGTTCTGGAGGCCACCACTTGTGGTCTTGGAAT 542
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 482 AAGAGAGATCAACGGTTCTACATGCCAAGTTCTGGAGGCCACCACTTGTGGTCTTGGGAT 541
Query 543 GGTATAATATCCACCGACTCTCAGTACCATGACTTACGCTTTCACAACCTTCCTCTGTTT 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 542 GGTATAATATCCACCGACTCTCAGTACCATGACTTACGCTTTCACAACCTTCCTCAGTTT 601
Query 603 TCACTTTCCGAGTTGCAGCTTTTGAGATCTTGTTACAGGACACAACAACTTGTGGAGTCT 662
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 602 TCACTTTCCGAGTTGCAGCTTTTGAGATCTTGTTACAGAACACAACATCTTGTGGAGTCT 661
Query 663 CCCTCAGGACAGCGTTTCCTAGTCAAATGGTATGTTCAAACCCTTGGCAGGTCTGTTCAA 722
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 662 CCCTCAGGACAACGTTTCCTAGTCAAATGGTCTGTTCAAACCCTTGGCAGGTCTGTTCAA 721
Query 723 AGCCTTGCGCATAGGTCGGTAAAATTCAGTTTTGGCGGCACAAAGCTATTCATGGTGTTC 782
|||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 722 AGCCTTGCGCATCGGTCGGTAGAATTCAGTTTTGGCGGCACAAAGCTGTTCATGGTGTTT 781
Query 783 AGAGAGGAGGAAGATATGAACTTGTGTTACACACAAGACATTGGTGATCTCTGCATATTC 842
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 782 AGAGAGGAGGAGGATATGAACATGTGTTACACACAAGACATTGGTGATCTCTGCATATTC 841
Query 843 CTCGGCAATAACGAGCCTTTTTGTGTCAAGGCCAGCTCCTTCCCGGGCCTAAACCCTAAT 902
||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 842 CTCGGCAATAACGAGCCTTTTTGTGTCAAGGCCAGTTCATTCCCTGGCCTAAACCCTAAT 901
Query 903 TCCATTTATTTCCTCGGTGACCGTTATGGTGAAGGCTATGGTATTTACGATATTGCCACT 962
||||| |||||| | |||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 902 TCCATCTATTTCATAGGTGACCGTTATGGTGAAGGCTATGGCGTTTACGATATCGCCACT 961
Query 963 AGAACCCCACGTTCCTTCAATCCCAAGTCTTTTTCAGCTTTCTCTGATTTACCTAATGGC 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 AGAACCCCACGTTCCTTCAATCCCAAGTCTTTTTCAGCTTTCTCTGATTTACCTAATGGC 1021
Query 1023 CAAGGTTACGTGGTTCCCAATTGGGTTCCTCACTGGATTCCTCCATTTCCTCTCTAGTTG 1082
||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1022 CAAGGTTACGTTCTTCCTAATTGGCTTCCTCACTGGATTCCTCCATTTCCTCTCTAGTTG 1081
Query 1083 ATATGTTATTCGTTTTC 1099
|| || ||||||||||
Sbjct 1082 TTAGGTCATTCGTTTTC 1098
> AT4G16080.1 | Symbols: | Protein of unknown function (DUF295)
| chr4:9101348-9102887 REVERSE LENGTH=1455
Length=1455
Score = 717 bits (388), Expect = 0.0
Identities = 764/936 (82%), Gaps = 63/936 (7%)
Strand=Plus/Plus
Query 69 ACAGAGCTCCGCATGTTTGACCCGGCCAAGGAAGAGTATTTTACCGTCCG-TGATAAGCC 127
|||||| ||| |||||| ||||||||||| || || ||||| ||| ||| |||||||||
Sbjct 393 ACAGAGTTCCTCATGTTGGACCCGGCCAAAGAGGATTATTTCACC-ACCGTTGATAAGCC 451
Query 128 ACTTACCAAAGAGTTGGTTACGTCGAGGCTGGTGGGAAGTTCCCATGGTTGGGGAGTTTT 187
|||| ||||| | ||| ||| ||| | ||| ||||||||||||||||| ||||| ||||
Sbjct 452 ACTTCCCAAAAATTTGATTAAGTCTAAGCTAGTGGGAAGTTCCCATGGATGGGGTGTTTA 511
Query 188 TCTTGGCTCCCCTAATTCCATACTAATTAGCGACTACTGCAATCCATCGAGCTCCAAATC 247
||| |||||||| ||| ||||||||| ||| | ||| |||| ||||| || |||||
Sbjct 512 TCTCAGCTCCCCTGATTACATACTAATCAGC-A--ACT---ATCCCTCGAGGTCTAAATC 565
Query 248 AAACCCCAAGATGATCCCTCTGCCTCCTCGAAGTTATGAAT-ACT-CTTGTCAAAATGAA 305
||| |||||||| || |||||||||||| || | | | | || ||||| ||||
Sbjct 566 AAATCCCAAGATCATTGATCTGCCTCCTCG-TCCTA-GTCTAAATGGTTCTCAAACTGAA 623
Query 306 TTGGTAAGTGGCGTGGCAATGTCCTCTTCTCCTGAAGAAGAAGACTTCGTTATCGCTGTC 365
||||||||||| |||||||||||||||||||||||||| ||||| | | |||| ||||||
Sbjct 624 TTGGTAAGTGGTGTGGCAATGTCCTCTTCTCCTGAAGAGGAAGAATGCATTATTGCTGTC 683
Query 366 AAGTTCACGGGACGTCGGGTGAGTATATATAGGCCCGGTCAACACCGTAAGGGGAACCAC 425
|| | || |||||||| |||||||||||||| ||| |||||| || || ||||| || |
Sbjct 684 AAATACATGGGACGTCCGGTGAGTATATATACGCCTGGTCAAGACAGTCAGGGGTTCCTC 743
Query 426 C--GCTTTTCGTCTACTGA-ATTATTCGATTATTTTGAACAAGCCAACTTGATGTATTCC 482
| || | | ||| ||| | |||||||||||||||||| ||| | || ||||||||||||
Sbjct 744 CTTGC-TAT-GTCCACT-AGATTATTCGATTATTTTGAGCAATCTAAGTTGATGTATTCC 800
Query 483 AAGAGAGATCAAAGGTTCTACATGCCAAGTTCTGGAGGCCACCACTTGTGGTCTTGGAAT 542
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 801 AAGAGAGATCAAAGGTTCTACATGCCAAGTTCTGGTGGCCACCACTTGTGGTCTTGGGTT 860
Query 543 GGTATAATATCCACCGACTC-TCAGTACCATGACTTAC-GCTTTCACAACCTTCCTCTGT 600
||| | ||||||| || | |||||||||||| ||| | ||||| |||||||||| ||
Sbjct 861 GGTCTCCCATCCACC-ACGCCTCAGTACCATGAGTTAAAG-TTTCATAACCTTCCTCAGT 918
Query 601 TTTCACTTTCCGAGTTGCAGCTTTTGAGAT-CTTGTTACAGGACACAACAA-CTTGTGGA 658
|||| | |||||||||||||||||| ||| ||||||||||| |||| | | ||||||||
Sbjct 919 TTTCGCATTCCGAGTTGCAGCTTTTC-GATTCTTGTTACAGGGCACA-CGAGCTTGTGGA 976
Query 659 GTCTCCCTCAGGACAGCGTTTCCTAGTCAAATGGTATGTTCAAA-CCCTTGGCAGGTCTG 717
|||||| |||||||| |||||| || |||||||||| ||| ||| |||| | | | |
Sbjct 977 GTCTCCTTCAGGACAACGTTTCTTACTCAAATGGTACGTTGAAAGCCCT-G-C-GAAC-- 1031
Query 718 TTCAAAGCCTTGCGCATAGGTCGGTAAAATTCAGTTTTGGCGGCACAAAGCTATTCATGG 777
|| | | || ||| | | |||| || |||||||||||||| |||||||
Sbjct 1032 ---AA-G--T--CGT-TAG-T----A---TTCAATTGTGGCGGCACAAAGCGGTTCATGG 1074
Query 778 TGTTCAGAGAGGAGGAAGATATGAACTTGTGTTACACACAAGACATTGGTGATCTCTGCA 837
|||| ||||| |||||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct 1075 TGTTTAGAGAAGAGGAAGACATGAACATGTGTTACACAGAAGACATTGGTGATCTCTGCA 1134
Query 838 TATTCCTCGGCAATAACGAGCCTTTTTGTGTCAAGGCCAGCTCCTTCCCGGGCCTAAACC 897
||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1135 TATTCCTCGGCAACAACGAGCCTTTTTGTGTCAAGGCCAGCTCATTCCCGGGACTAAACC 1194
Query 898 CTAATTCCATTTATTTCCTCGGTGACCGTTATGGTGAAGGCTATGGTATTTACGATATTG 957
|||||||||| |||||||||||||| | || ||| ||| |||| ||||| |
Sbjct 1195 CTAATTCCATCTATTTCCTCGGTGA-----A-GG------CTACGGTGTTTATGATATCG 1242
Query 958 CCACTAGAACCCCACGTTCCTTCA-ATCCCAAGTCT 992
|||||||| ||||||||||||||| | |||||||||
Sbjct 1243 CCACTAGATCCCCACGTTCCTTCACA-CCCAAGTCT 1277
> AT2G45930.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G16090.1); Has 161
Blast hits to 161 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr2:18901392-18902798
REVERSE LENGTH=1314
Length=1314
Score = 182 bits (98), Expect = 8e-45
Identities = 201/248 (81%), Gaps = 18/248 (7%)
Strand=Plus/Plus
Query 762 ACAAAGCTATT-CATGGTGTTCAGAGAGGAGGAAGATATGAACTTGTGTTACACACAAGA 820
||||||| ||| |||||| || ||||||||||||||||||||| |||||||||| | ||
Sbjct 905 ACAAAGC-ATTTCATGGTCTTTAGAGAGGAGGAAGATATGAACATGTGTTACACTGAGGA 963
Query 821 CATTGGTGATCTCTGCATATTCCTCGGCAATAAC-GAGCCTTTTTGTGTCAAGGCCAGCT 879
|||||| |||||||||||||||||||||| || ||||| || ||||||||||| ||||
Sbjct 964 CATTGGAGATCTCTGCATATTCCTCGGCAG-AAGTGAGCCCTTCTGTGTCAAGGCAAGCT 1022
Query 880 CCTTCCCGGGCCTAAACCCTAATTCCATTTATTTCCTCGGTGACCGTTATGGTGAAGGCT 939
| ||||| ||| |||||||||| ||||| ||||| | | | | || || ||||
Sbjct 1023 CATTCCCTGGCTTAAACCCTAACTCCATCTATTT--T-G----C----A-GGCGATGGCT 1070
Query 940 ATGGTATTTACGATATTGCCACTAGAACCCCACGTTCCTT-CAATCCCAAGTCTTTTTCA 998
|||| |||||||||| |||||||||| ||||||||||| | |||||||||| |||
Sbjct 1071 TTGGTGTTTACGATATCGCCACTAGAAAACCACGTTCCTTTCG-TCCCAAGTCTCCCTCA 1129
Query 999 GCTTTCTC 1006
|| |||||
Sbjct 1130 GCCTTCTC 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53865184785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5