BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935564
Length=844
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45980.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1136 0.0
AT4G00355.3 | Symbols: | unknown protein; BEST Arabidopsis tha... 82.4 7e-15
> AT2G45980.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 25
plant structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00355.2);
Has 93 Blast hits to 90 proteins in 15 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr2:18917352-18919109 REVERSE LENGTH=1265
Length=1265
Score = 1136 bits (615), Expect = 0.0
Identities = 737/793 (93%), Gaps = 20/793 (3%)
Strand=Plus/Plus
Query 47 TGAGGAGCATCCTCCTCGTGGGAATGAATGGGAAGTCGTCTCGCTTACTTCTTCAGCTTA 106
|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 178 TGAGGAGCATCCTCCTCGAGGGAATGAATGGGAAGTCGTCTCGCTCACTTCATCAGCTTA 237
Query 107 CGCTGCTGCTCCTGGTCCGTATAACGTTGAATCAAGAGATTTGCGCAAGTATGATGCTTA 166
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 238 TGCTGCTGCTCCTGGTCCGTATAACGTTGAATCAAGAGATGTGCGCAAGTATGATGCTTA 297
Query 167 CTATGGAGCAGAAACTTCACGTGATCTGTACATGTCTGAACACTTTGTATTCCCACCTAG 226
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CTATGGAGCGGAAACTTCACGTGATCTGTACATGTCTGAACACTTTGTATTCCCACCTAG 357
Query 227 CGAGCATGAGAATTTACCCATTGATGAA-CATTTATTCAAGGAGGAGCAAAGAAAGGATG 285
||||||||||||||||||||||||||| | ||||||| || |||||||||||||||||
Sbjct 358 TGAGCATGAGAATTTACCCATTGATGAATC-TTTATTCGTGGCGGAGCAAAGAAAGGATG 416
Query 286 GCGGAGACTTGATGCTCGAAGGCCAGGGATTGTCTGATCAGTTTCATTATGAAGCTGGAA 345
|| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 417 GCCGAGACTTGATGCTGGAAGGTCAGGGATTGTCTGATCAGTTTCATTATGAAGCTGGAA 476
Query 346 ACAACCAACAGAGTATCTATGGTGAATCTGCGCTTGGTTCTTCTAGACACATGGAATCAT 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 ACAACCAACAGAGTATCTATGGTGAATCTGCGCTTGGTTCTTCTAGACACATGGAATCAT 536
Query 406 TCGGAAGTGAATCAGCCATGTATGAACACGGGTTAGTTGATGCCGAGCCAAATGAGTATG 465
||||||| ||||||||| ||||||||||||| ||||||||||| || | | | |
Sbjct 537 TCGGAAGCGAATCAGCCGTGTATGAACACGGATTAGTTGATGC--AG--A---G-G---G 585
Query 466 CAGAGGGAAACTTAGATCTCCATTCTGATACCGAGGGCGAAAAAGATGCCGAAAAATCAA 525
| | | ||||||||||||||||||| ||||| ||||| |||| |||||||||
Sbjct 586 -A-A---A--CTTAGATCTCCATTCTGATGGTGAGGGTGAAAAGGATGTAAAAAAATCAA 638
Query 526 CGCACAACCTTCCTTGTGAAGCTTGGTGGAAAAGGAGAGCTATTTCTATGTATTCACGCA 585
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 CACACAACCTTCCTTGTGAAGCTTGGTGGAAAAGGAGAGCTATTTCTATGTATTCACGCA 698
Query 586 CAAGAGAAGCAAACGCGATATGGTCCTTATTCTTTGCAGCTGCAGTCGCAGGACTCGTAG 645
||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 699 CAAGAGAAGCAAATGCGATATGGTCCTTATTCTTTGCAGCTGCGGTCACAGGACTCGTAG 758
Query 646 TTCTTGGTCAACGCTGGCAACAAGAGAGGTGGCAGGTTTTGCAACTCAAGTGGCAATCAA 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 TTCTTGGTCAACGCTGGCAACAAGAGAGGTGGCAGGTTTTGCAACTCAAGTGGCAATCAA 818
Query 706 GCATCAGTAGCGAGAAACTGAGCAGAGTACTCGAACCTCTCTCGCGCTTGAAAGACGTGA 765
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 819 GCATCAGTAGCGAGAAACTGGGCAGAGTACTTGAACCTCTCTCGCGCTTGAAAGACGTGA 878
Query 766 TTGTGAGAAGTAACCCACAAGCTTCGCTCGTAAGGAGTGGTTCATCCAGTGAGGTCTAGA 825
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 879 TTGTGAGAAGTAACCCACAAGCTTCTCTCGTAAGGAGTGGCTCCTCCAGTGAGGTCTAGA 938
Query 826 GGCAAAGTATGAT 838
| | || ||||||
Sbjct 939 GACGAACTATGAT 951
> AT4G00355.3 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G45980.1);
Has 100 Blast hits to 97 proteins in 16 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:154888-156376
FORWARD LENGTH=1406
Length=1406
Score = 82.4 bits (44), Expect = 7e-15
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 63 CGTGGGAATGAATGGGAAGTCGTCTCGCTTACTTCTTCAGCTTACGCTGCTGCTCCTGGT 122
||||| ||||| |||||||| || || |||||| ||||||||||||||||||||||||||
Sbjct 347 CGTGGAAATGATTGGGAAGTTGTTTCTCTTACTGCTTCAGCTTACGCTGCTGCTCCTGGT 406
Query 123 CC 124
||
Sbjct 407 CC 408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41141766393
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5