BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935565
Length=847
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45990.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1328 0.0
> AT2G45990.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth stages;
Has 312 Blast hits to 312 proteins in 90 species: Archae -
0; Bacteria - 131; Metazoa - 0; Fungi - 0; Plants - 67; Viruses
- 0; Other Eukaryotes - 114 (source: NCBI BLink). | chr2:18919316-18921229
FORWARD LENGTH=1079
Length=1079
Score = 1328 bits (719), Expect = 0.0
Identities = 796/834 (95%), Gaps = 2/834 (0%)
Strand=Plus/Plus
Query 15 AGGAAAATGGGAGATCTCTACGCTTTGGACTTCGATGGAGTTCTCTGTGACAGTTGTGGA 74
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 81 AGGAGAATGGGAGATCTCTACGCTTTGGACTTCGATGGAGTTCTCTGTGATAGTTGTGGA 140
Query 75 GAGAGCTCTCTATCTGCTGTCAAGGCTGCGAAAGTGAGATGGCCTAATTTGTTCGAAGGA 134
|| ||||||||||||||||| ||||| || ||||||||||||||| ||||||||||||||
Sbjct 141 GAAAGCTCTCTATCTGCTGTTAAGGCAGCCAAAGTGAGATGGCCTGATTTGTTCGAAGGA 200
Query 135 GTTGATTCCGCTTTAGAGGAATGGATCGTCGATCAAATGCATATTGTGAGACCTGTTGTG 194
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 201 GTTGATTCCGCTTTAGAGGAATGGATCGTCGATCAAATGCATATTGTGAGACCTGTGGTT 260
Query 195 GAAACTGGCTATGAAAATCTTCTACTTGTGCGGCTGCTATTGGAGACCAAGATACCGTCT 254
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 261 GAAACTGGCTATGAAAATCTTCTACTTGTGCGGCTGTTATTGGAGACCAAGATACCGTCT 320
Query 255 ATACGAAAATCTTCAGTTGCAGAGGGTTTGACTGCTGATGGGATATTGGAGGGCTGGGCA 314
|| ||||||||||||||||||||||| ||||| | |||||||||| ||||| ||||||||
Sbjct 321 ATTCGAAAATCTTCAGTTGCAGAGGGGTTGACGGTTGATGGGATACTGGAGAGCTGGGCA 380
Query 315 AAGATTAAGCCCGTAATCATGGAAGCTTGGGATGAAGATAAAGATGCTCTGATCGATTTG 374
||| |||||||||| ||||||||||||||||||||||||| ||||||| || | ||||||
Sbjct 381 AAGTTTAAGCCCGTGATCATGGAAGCTTGGGATGAAGATAGAGATGCTTTGGTAGATTTG 440
Query 375 TTTGGAAAAGTTAGAGATGATTGGATTAACAAGGACTTGACAACTTGGATTGGTGCCAAT 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 TTTGGAAAAGTTAGAGATGATTGGATTAACAAGGACTTGACAACTTGGATTGGTGCCAAT 500
Query 435 AGATTCTATCCAGGAGTTTCAGATGCACTGAAATTTGCCAGCTCAAAGATTTATATCGTT 494
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 AGATTCTACCCAGGAGTTTCAGATGCACTGAAATTTGCCAGCTCAAAGATTTATATCGTT 560
Query 495 ACCACGAAACAGGGCCGCTTTGCAGAAGCGTTACTGCGTGAAATAGCAGGTGTAATCATA 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 ACCACGAAACAGGGCCGCTTTGCAGAAGCGTTACTGCGTGAAATAGCAGGTGTAATCATA 620
Query 555 CCATCAGAAAGGATTTATGGTTTGGGTTCAGGGCCAAAGGTGGAAGTGCTAAAGCTACTT 614
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 621 CCATCAGAAAGGATTTATGGTTTGGGTTCAGGGCCAAAGGTGGAAGTTCTAAAGCTACTT 680
Query 615 CAAGATAAACCAGAACATCAGGGCTTGACGCTGCATTTCGTGGAAGACAGACTCGCAACG 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 CAAGATAAACCAGAACATCAGGGCTTGACGCTGCATTTCGTGGAAGACAGACTCGCAACG 740
Query 675 CTGAAGAATGTCATCAAAGAGCCTGAATTAGACAAATGGAATTTATACCTAGGAAATTGG 734
||||| |||||||| ||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 741 CTGAAAAATGTCATAAAAGAGCCTGAATTAGACAAATGGAGTTTATACCTAGGAACCTGG 800
Query 735 GGCTACAACACCGAGAAAGAGAGAGCAGAAGCAGCAAGCATTTCCAGGATTCAGGTTATC 794
|| |||||||| |||||||||||||| ||||||||| ||||| ||||||||||||||||
Sbjct 801 GGATACAACACTGAGAAAGAGAGAGCTGAAGCAGCAGGCATTCCCAGGATTCAGGTTATT 860
Query 795 GAGCTCTCCACGTTTAGCAATAAGCTTAAATGAGTGCATA--CTCATCGGAAAA 846
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 861 GAGCTCTCCACGTTTAGCAATAAGCTTAAATGAGTGCATATACTCATTGGAAAA 914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41292468834
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5