BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935574
Length=1084
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46080.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein B... 1805 0.0
> AT2G46080.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein
BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana
protein match is: Protein of unknown function (DUF793) (TAIR:AT1G01550.2);
Has 153 Blast hits to 139 proteins in 20
species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants
- 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr2:18948117-18950105 REVERSE LENGTH=1469
Length=1469
Score = 1805 bits (977), Expect = 0.0
Identities = 1041/1073 (97%), Gaps = 0/1073 (0%)
Strand=Plus/Plus
Query 12 TCTAGCAAAATGAGCCGAGCACAAGATCCACCACGAGGTTTCTTCCCATTTGGAAATCCC 71
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 217 TCTAGCAAAATGAGCCGACCACAAGATCCACCCCGAGGTTTCTTCCCATTTGGAAATCCC 276
Query 72 TTTCGGATGTTATCACCAAAGGGCTCAGATTTATCGCCATGGCTACTTTCTCTATTGAAC 131
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 277 TTTCGGATGTTATCATCAAAGGGATCAGATTTATCGCCATGGCTACTTTCTCTATTGAAC 336
Query 132 GGCTTTGAGCTACGTTTGGAAGAGAGACTGAAGAAACTTATGCCTAAGAGCAAAGATGAA 191
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 337 GGCTTTGAGCTACGTTTGGAAGAGAGACTGAAGAAACTTATGCCTAAGAACAAAGATGAC 396
Query 192 ATCCTCACTTTATCGTGGATGAAGCTAGCTATGGAGTCACTCTGCGAGACTCATAATAAC 251
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 397 ATCCTCACTTTATCCTGGATGAAGCTAGCTATGGAGTCACTCTGCGAGACTCATAAGAAC 456
Query 252 ATAAACACTCTCATCACTGATCTCCAGCTTCCTGTCTCTGATTGGGAAGAGAAATGGGTT 311
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 ATTAACACTCTCATTACTGATCTCCAGCTTCCTGTCTCTGATTGGGAAGAGAAATGGGTT 516
Query 312 GATGTTTACCTCAACATAAGCGTTAGGTTACTAGATCTCTGCAATGCCTTTAGCTCAGAG 371
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 517 GATGTTTACCTCAACATAAGCGTTAGGTTACTAGATCTCTGTAATGCCTTTAGCTCTGAG 576
Query 372 CTCACACGTCTCAACCAGGGAGATCTCTTCCTCAAGTGTGTTCTGCACAATTTACAATCG 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 CTCACACGTCTCAACCAGGGAGATCTCTTCCTCAAGTGTGTTCTGCACAATTTACAATCG 636
Query 432 GATTCCGGGGAGAAGTATCTCCAGGCTCGGTCTTCGCTTGATAGCTGGAGGCAACATGTT 491
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 637 GATTCTGGGGAGAAGTATCTCCAGGCTCGATCTTCGCTTGATAGCTGGAGGCAACATGTT 696
Query 492 AATGCAAACAACCCTAGAATTGAAAACTGCCGTGCGGTTCTAGACAGTCTTGTTAAGTCT 551
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 697 AATACAAACAACCCTAGAATTGAAAACTGCCGTGCGGTTCTAGACAGTCTTGTTAAATCT 756
Query 552 CTGAGCCTGCCTAAAGTCAAGAACTCGCCTAAAGGAAAGGTTCTGATGCGAGCTTTTTAT 611
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 CTGAGTCTGCCTAAAGTCAAGAACTCGCCTAAAGGAAAGGTTCTGATGCGAGCTTTTTAT 816
Query 612 GGTGTGAAAGTTCAAACGGTCTATATATGCAGTGTATTTACCGCGGCCTGGTCTGATTCC 671
|||||||| |||||||| || ||||| ||||||||||||||||| |||||||||||||||
Sbjct 817 GGTGTGAAGGTTCAAACAGTTTATATCTGCAGTGTATTTACCGCAGCCTGGTCTGATTCC 876
Query 672 ACCAAGGATCTTTTCGATTTACCTGTCTCTGAAAAACCATTGTGGGCAAAGGTCTTTACT 731
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 877 ACCAAGGATCTTTTCGATTTACCTGTCTCTGAAAAACCATTATGGGCAAAGGTCTTTACT 936
Query 732 GATATGCAGAGTGTTGTAAATGCTGAGATCAGAGCCATGTTGTCTTCCGGTAGAACCACG 791
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 937 GATATGCAGAGTGTTGTAAATGCTGAGATCAGAGACATGTTGTCTTCCGGTAGAACCACG 996
Query 792 ATTCTCAAAGAGCTGGAGAGCGTTGATGCTAGTGTCGAGAAGCTATACCCGATGATCCAA 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 ATTCTCAAAGAGCTGGAGAGCGTTGATGCTAGTGTCGAGAAGCTATACCCGATGATCCAA 1056
Query 852 GATGGCGTTGATCCTGTTGAAGTTGAATGCTTCAAAGATTATGTTATGGAATTGGGGGCA 911
||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||| ||
Sbjct 1057 GATGGCGTTGATCCTGTCGAAGTTGAATTCTTCAAAGATAATGTTATGGAATTGGGGACA 1116
Query 912 CAAGCTGAGAAATTGTCTCAAGGGTTGGATCAGTTACTGGAGGAAGTTGATAGTTTCTTT 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 CAAGCTGAGAAATTGTCTCAAGGGTTGGATCAGTTACTGGAGGAAGTTGATAGTTTCTTT 1176
Query 972 AAACTGACTTTGAGCGGGCGCGATGTGTTGCTCTGTAATCTTAGGTCAAGTGACTCAATC 1031
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 AAACTGACTTTGAGAGGGCGCGATGTGTTGCTCTGTAATCTTAGGTCAAGTGACTCAATC 1236
Query 1032 TCTGGCAATGCAGTTGGAGAAGATGTAGAATAAAACAGTAAGGTAAACAAACA 1084
||||||||||||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct 1237 TCTGGCAATGCAGTTGGAGAAGATGTAGACTAAAATAGTGAGGTAAACAAACA 1289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53112176610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5