BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935577
Length=1084
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46110.1 | Symbols: PANB1, KPHMT1 | ketopantoate hydroxymeth... 1748 0.0
AT3G61530.1 | Symbols: PANB2 | Phosphoenolpyruvate carboxylase ... 845 0.0
> AT2G46110.1 | Symbols: PANB1, KPHMT1 | ketopantoate hydroxymethyltransferase
1 | chr2:18954570-18956530 REVERSE LENGTH=1400
Length=1400
Score = 1748 bits (946), Expect = 0.0
Identities = 1044/1090 (96%), Gaps = 12/1090 (1%)
Strand=Plus/Plus
Query 2 GGTTTATTCATCGAT-ACAACAATGGCTTCCTCACTCACTAGGAACTGCTCTCGCTTCTC 60
||||| |||||| | ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 99 GGTTTCTTCATC-TTCACAACAATGGCGTCCTCACTCACTAGGAATTGCTCTCGCTTCTC 157
Query 61 CAAAGCCATCTCTGTCCGTTTCATGAGTAACCTACCGGAGAACACCGTCTACGGAGGACC 120
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 158 AAAAGCCATCTCTGTCCGTTTCATGAGTAACCTACCGGAAAACACCGTCTACGGAGGACC 217
Query 121 AAAGCCGCAAAACCCAAACCAAAGAGTGACGCTAACGCATCTCAGACAAAAACACCGGAA 180
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 AAAGCCACAAAACCCAAACCAAAGAGTGACGCTAACGCATCTCAGACAAAAACACCGGAG 277
Query 181 AGGAGAACCGATCACCGTCGTAACTGCCTACGATTACCCATCCGCCGTTCATTTAGACAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 AGGAGAACCGATCACCGTCGTAACTGCCTACGATTACCCATCCGCCGTTCATTTAGACAC 337
Query 241 AGCTGCTGGTATCGATGTTTGTCTTGTTGGTGACTCAGCTTCCATGGTTGTTCATGGTCA 300
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 338 A---GCTGGTATCGATGTTTGTCTTGTCGGTGACTCAGCTTCCATGGTTGTTCATGGTCA 394
Query 301 CGACACAACACTTCCTATCTCCTTAGACGAGATGCTTGTCCATTGTCGAGCCGTTGCTCG 360
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 395 CGACACAACACTTCCTATCTCCTTAGACGAGATGCTTGTTCATTGTCGTGCCGTTGCTCG 454
Query 361 AGGCGCTAAACGGCCTCTCCTAGTTGGTGACTTGCC-TTTGGTACCTACGAGTCAAGCTC 419
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 455 AGGCGCTAAACGACCTCTCCTAGTTGGTGACTTGCCATTTGGTACCTACGAGTCAAGCTC 514
Query 420 ---T-A-GCGGTTGATACTGTTGTTAGGGTTTTGAAGGAAGGAGGAATGGATGCGATTAA 474
| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 515 TAGTCAGGCGGTTGATACTGCGGTTAGGGTTTTGAAGGAAGGAGGAATGGATGCGATTAA 574
Query 475 GCTCGAAGGAGGATCCGCTTCTAGGATCACTGCTGCAAAAGCCATAGTTGAAGCAGGAAT 534
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 575 GCTCGAAGGAGGATCAGCTTCTAGGATCACTGCTGCAAAAGCTATAGTTGAAGCAGGAAT 634
Query 535 TGCGGTTATCGGTCATGTGGGTCTAACTCCTCAGGCGATCAGCGTTCTTGGTGGTTTCAG 594
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 635 TGCGGTTATTGGTCATGTGGGTCTAACCCCTCAGGCGATTAGCGTTCTTGGTGGTTTCAG 694
Query 595 ACCCCAAGGCAGAAACATAGCTAGTGCTGTTAAAGTTGTTGAGACTGCAATGGCTTTACA 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 ACCCCAAGGCAGAAACATAGCTAGTGCTGTTAAAGTTGTTGAGACTGCAATGGCTTTACA 754
Query 655 AGAAGCTGGATGTTTTTCTGTTGTTTTGGAATGCATTCCACCTCCTGTGGCTGCTGCTGC 714
|||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||
Sbjct 755 AGAAGCTGGATGTTTTTCGGTTGTTTTGGAATGCGTTCCACCTCCTGTAGCTGCTGCTGC 814
Query 715 AACCTCTGCCCTCAAGATACCAACCATTGGCATTGGGGCTGGACCATTCTGCAGTGGACA 774
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 815 AACTTCTGCCCTCAAGATACCAACCATTGGCATTGGGGCTGGACCTTTCTGCAGTGGACA 874
Query 775 GGTGCTAGTTTACCATGATCTTCTTGGTATGATGCAACATCCACATCATGCCAAGGTTAC 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 GGTGCTAGTTTACCATGATCTTCTTGGTATGATGCAACATCCACATCATGCCAAGGTTAC 934
Query 835 TCCAAAGTTTTGCAAGCAGTACGCTAATGTAGGAGAAGTGATTAACAAAGCCTTAATGGA 894
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 935 TCCAAAGTTTTGCAAGCAGTACGCTAATGTCGGAGAAGTGATTAACAAAGCCCTAATGGA 994
Query 895 ATACAAAGAAGAAGTCTCTAAAAAAGTGTTTCCAGGTCCTTCTCACAGTCCTTACAAGAT 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 ATACAAAGAAGAAGTCTCTAAAAAAGTGTTTCCAGGTCCTTCTCACAGTCCTTACAAGAT 1054
Query 955 CACAGCAAGCGAGCTCGATGGGTTCTTAACCGAGTTGCAGAATCTTGGCTTTGACAAGGC 1014
||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1055 CACAGCAAGTGAGCTCGATGGGTTCTTAACCGAGTTGCAGAAGCTTGGTTTTGACAAGGC 1114
Query 1015 CGTTTCTGCAGCAGCTTCAGCAACTGAGAACATGGAGCCTTCAAAGTGACAATTGTATTC 1074
| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1115 TGCTTCTGCAGCAGCTTTAGCAGCTGAGAACATGGAGCCTTCAAAGTGACAATTGTAT-C 1173
Query 1075 CAAAATCTTG 1084
||||| ||||
Sbjct 1174 CAAAAGCTTG 1183
> AT3G61530.1 | Symbols: PANB2 | Phosphoenolpyruvate carboxylase
family protein | chr3:22771442-22773356 REVERSE LENGTH=1358
Length=1358
Score = 845 bits (457), Expect = 0.0
Identities = 823/999 (82%), Gaps = 27/999 (3%)
Strand=Plus/Plus
Query 74 GTCC-GTTTCATGAGTAACCTACCGGAGAACACCGTCTACGGAGGACC-AAAGCCGCAAA 131
|||| |||| ||||| ||| |||||||| |||| || ||||||||||| ||| ||||| |
Sbjct 101 GTCCGGTTT-ATGAGCAACGTACCGGAGGACACGGTTTACGGAGGACCGAAA-CCGCAGA 158
Query 132 ACCCAAACCAAAGAGTGACGCTAACGC-ATCTCAGACAAAAACACCGGAAAGGAGAACCG 190
|| | || || |||||||| | |||| || | ||||| || || |||||||| || |||
Sbjct 159 ACTCGAATCAGAGAGTGACTTTGACGCAAT-TGAGACAGAAGCATCGGAAAGGTGAGCCG 217
Query 191 ATCACCGTCGTAACTGCCTACGATTACCCATCCGCCGTTCATTTAGACACAGCTGCTGGT 250
|| || | || || |||||||||||||| || |||||||| | || ||| |||||
Sbjct 218 ATAACTATGGTCACCGCCTACGATTACCCTTCTGCCGTTCACATCGATACA---GCTGGA 274
Query 251 ATCGATGTTTGTCTTGTTGGTGACTCAGCTTCCATGGTTGTTCATGGTC-ACGACACAAC 309
|||||||||||||| || || || |||||| |||||||||| ||||| | | ||||| ||
Sbjct 275 ATCGATGTTTGTCTCGTCGGAGATTCAGCTGCCATGGTTGTCCATGG-CTATGACACCAC 333
Query 310 ACTTCCTATCTCCTTAGACGAGATGCTTGTCCATTGTCGAGCCGTTGCTCGAGGCGCTAA 369
||||||||||||||||| ||||||||||| || ||||| ||||||||||| || || ||
Sbjct 334 TCTTCCTATCTCCTTAGAGGAGATGCTTGTTCACTGTCGCGCCGTTGCTCGCGGAGCCAA 393
Query 370 ACGGCCTCTCCTAGTTGGTGACTTGCC-TTTGGTACCTACGAGTCAAGC-TC--T-A-GC 423
| | || || || || || || ||||| |||||||| || || || ||| | | | ||
Sbjct 394 AAGACCACTTCTTGTCGGCGATTTGCCGTTTGGTACTTATGAATCTAGCACCAATCAGGC 453
Query 424 GGTTGATACTGTTGTTAGGGTTTTGAAGGAAGGAGGAATGGATGCGATTAAGCTCGAAGG 483
||||||||||| |||||||| ||||| ||||||||||||||||| ||||| || |||||
Sbjct 454 GGTTGATACTGCAGTTAGGGTGTTGAAAGAAGGAGGAATGGATGCTATTAAACTTGAAGG 513
Query 484 AGGATC-CGCTTCTAGGATCACTGCTGCAAAAGCCATAGTTGAAGCAGGAATTGCGGTTA 542
|||||| | |||| |||||||||||||||||| |||| || |||||||| ||||| ||||
Sbjct 514 AGGATCAC-CTTCAAGGATCACTGCTGCAAAATCCATTGTGGAAGCAGGGATTGCCGTTA 572
Query 543 TCGGTCATG-TGGGTCTAACTCCTCAGGCGATCAGCGTTCTTGGTGGTTTCAGACCCCAA 601
| || |||| ||||| | |||||||| || ||||| ||||||||||||||||| || ||
Sbjct 573 TGGGACATGTTGGGT-TGACTCCTCAAGCTATCAGTGTTCTTGGTGGTTTCAGGCCACAG 631
Query 602 GGCAGAAACATAGCTAGTGCTGTTAAAGTTGTTGAGACTGCAATGGCTTTACAAGAAGCT 661
|||| |||||| |||||||||||||| ||||| || ||||| |||||||| |||||||||
Sbjct 632 GGCAAAAACATTGCTAGTGCTGTTAAGGTTGTGGAAACTGCTATGGCTTTGCAAGAAGCT 691
Query 662 GGATGTTTTTCTGTTGTTTTGGAATGCATTCCACCTCCTGTGGCTGCTGCTGCAACCTCT 721
||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 692 GGATGTTTTTCGGTTGTTTTAGAATGTGTTCCACCTCCTGTGGCTGCTGCTGCAACCTCT 751
Query 722 GCCCTCAAGATACCAACCATTGGCATTGGGGCTGGACCATTCTGCAGTGGACAGGTGCTA 781
|| || || || |||||||||||||| || ||||| || ||||||||||| ||||| ||
Sbjct 752 GCTCTTAATATTCCAACCATTGGCATAGGAGCTGGCCCTTTCTGCAGTGGTCAGGTTTTA 811
Query 782 GTTTACCATGATCTTCTTGGTATGATGCAACATCCACATCATGCCAAGGTTACTCCAAAG 841
|| |||||||||||||| || |||||||| ||||||||||| || |||||||||||||||
Sbjct 812 GTCTACCATGATCTTCTGGGAATGATGCAGCATCCACATCACGCTAAGGTTACTCCAAAG 871
Query 842 TTTTGCAAGCAGTACGCT-AATGTAGGAGAAGTGATTAACAAAGCCTTAATGGAATACAA 900
|||||||| ||||||||| || |||||||||||||| ||||||||| | |||| || ||
Sbjct 872 TTTTGCAAACAGTACGCTCAA-GTAGGAGAAGTGATCAACAAAGCCCTCTTGGAGTATAA 930
Query 901 AGAAGAAGTCTCTAAAAAAGTGTTTCCAGGTCCTTCTCACAGTCCTTACAAGATCACAGC 960
|||||||| || ||| | |||||||||||||||||||||| |||||||||||| | |
Sbjct 931 GGAAGAAGTATCCAAACACTTGTTTCCAGGTCCTTCTCACAGCCCTTACAAGATCTCCTC 990
Query 961 AAGCGAGCTCGATGGGTTCTTAACCGAGTTGCAGAATCTTGGCTTT-GACAAGGCCGTTT 1019
|||||| || || || ||||||| |||||| ||||| |||| || || || || | ||
Sbjct 991 AAGCGACCTGGACGGATTCTTAAGCGAGTTACAGAAA-TTGGGATTAGATAAAGCTGCTT 1049
Query 1020 CTGCA-GCAGCTTCAGCAACTGAGAACATGGAGCCTTCA 1057
||| | ||||| || || |||| || ||||| | ||||
Sbjct 1050 CTG-ATGCAGCAGCATCAGCTGAAAAGATGGATCATTCA 1087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53112176610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5