BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935582
Length=809
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46170.1 | Symbols: | Reticulon family protein | chr2:18965... 1315 0.0
AT5G41600.1 | Symbols: BTI3, RTNLB4 | VIRB2-interacting protein... 84.2 2e-15
> AT2G46170.1 | Symbols: | Reticulon family protein | chr2:18965313-18967213
FORWARD LENGTH=1138
Length=1138
Score = 1315 bits (712), Expect = 0.0
Identities = 768/796 (96%), Gaps = 0/796 (0%)
Strand=Plus/Plus
Query 1 GAAATTGAATTTGAAAAATCAATGGCGGAAGAAATTGAGAAATCTGTGCCGGCGGAGGAA 60
|||||||||||| ||||||||||||||||||||||||| |||||||||||| | ||||||
Sbjct 77 GAAATTGAATTTCAAAAATCAATGGCGGAAGAAATTGAAAAATCTGTGCCGACAGAGGAA 136
Query 61 TCTCTGATGGAGAAGATCGCTGAGAAGATTCACCACCACGATTCGTCTTCATCGTCTGAA 120
|||||||||||||||||| | |||||||||||||| ||||||||||| ||||||||||||
Sbjct 137 TCTCTGATGGAGAAGATCTCCGAGAAGATTCACCATCACGATTCGTCGTCATCGTCTGAA 196
Query 121 TCCGAGTACGAGAAACCTGATTCGCCTTCCGCTGTAAAGGCGAAGATCTATCGTCTGTTT 180
||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||||
Sbjct 197 TCCGAGTACGAGAAACCTGATTCTCCTTCGGCTGTGAAGGCGAAGATCTATCGTATGTTT 256
Query 181 GGCAGAGAGAAGCCTGTTCACAAGGTTCTCGGTGGTGGAAAGCCTGCTGATGTGTTCTTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 GGCAGAGAGAAGCCTGTTCACAAGGTTCTCGGTGGTGGAAAGCCTGCTGATGTGTTCTTG 316
Query 241 TGGAGGGATAAAAAACTGTCAGCTGCTGTTCTTGGTGTCGCGACTGCTATTTGGGTTCTG 300
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 317 TGGAGGGATAAAAAACTATCAGGTGCTGTTCTTGGTGTCGCGACTGCTATTTGGGTTCTG 376
Query 301 TTCGAGCTGGTTGAGTATCATTTGTTGAGTCTTTTGTGTCACATTTCGATACTCGCTCTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 TTCGAGCTGGTTGAGTATCATTTGTTGAGTCTTTTGTGTCACATTTCGATACTCGCTCTT 436
Query 361 GGAGGCCTCTTTTTGTGGTCCAATGTTCACACATTTATCAACAAGTCTTCACCACAAATT 420
||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||
Sbjct 437 GGAGGCCTCTTTTTGTGGTCCAATGCTCACACACTTATCAACAAGACTTCACCACAAATT 496
Query 421 CCAGAAATCCATGTTCCCGAGGAGGCTTTCCTTGTGGTTGCTTCTTCTCTGAGAAACGAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 CCAGAAATCCATGTTCCCGAGGAGGCTTTCCTTGTGGTTGCTTCTTCTCTGAGAAACGAA 556
Query 481 CTAAACCAAGCTTTTGTTATCCTACGAAGCATTGCTTTAGGAAGGGACCTaaaaaaaTTC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 CTAAACCAAGCTTTTGTTATCCTACGAAGCATTGCTTTAGGAAGGGACCTAAAAAAATTC 616
Query 541 CTAATGATTGTTGTTGGTCTATGGATCATCTCGGTGGTGGGCAATTGGTGCAACTTCCTG 600
|| ||| ||||||| |||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 617 CTGATGGTTGTTGTCGGTCTATGGATCATCTCGGTGGTGGGCAATTGGTTCAATTTCCTG 676
Query 601 ACTTTGGTGTACATCTGCTTCGTGATATTGCACACAGTGCCAATGTTGTATGAGAAACAC 660
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 677 ACTTTGGTGTACATTTGCTTCGTGATATTGCACACAGTCCCAATGTTGTATGAGAAACAC 736
Query 661 GAGGACAAGGTTGATCCATTGGCAGAGAAAGCAATGAAGGAGTTGCAGAAACAGTACGTG 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 737 GAGGACAAGGTTGATCCATTGGCAGAGAAAGCAATGAAGGAGTTGCAGAAACAGTATGTG 796
Query 721 GTTTTTGATGAAAAGGTTCTCTCTAAGATTCCCATTGCTTCTCTCAAGGCAAAGGCAAAG 780
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 GTTTTCGATGAAAAGGTTCTCTCTAAGATTCCCATTGCTTCTCTCAAGGCAAAGGCAAAA 856
Query 781 TTGGGTTAAACAGAGA 796
|||||||||| |||||
Sbjct 857 TTGGGTTAAAAAGAGA 872
> AT5G41600.1 | Symbols: BTI3, RTNLB4 | VIRB2-interacting protein
3 | chr5:16636130-16637693 FORWARD LENGTH=1095
Length=1095
Score = 84.2 bits (45), Expect = 2e-15
Identities = 73/86 (85%), Gaps = 4/86 (5%)
Strand=Plus/Plus
Query 163 AAGATCTATCGTCTGTTT-GGCAGAGAGAAGCCTGTTCACAAGGTTCTCGGTGGTGGAAA 221
||||| || || || ||| || || ||||| |||||||||||||||||||||||||||||
Sbjct 242 AAGATTTACCGACT-TTTCGGAAGGGAGAAACCTGTTCACAAGGTTCTCGGTGGTGGAAA 300
Query 222 GCCTGCTGATGTGTTC-TTGTGGAGG 246
||||||||| | ||| || ||||||
Sbjct 301 ACCTGCTGATATATTCCTT-TGGAGG 325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39383571248
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5