BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935594
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46280.1 | Symbols: TRIP-1, TIF3I1 | TGF-beta receptor inter... 1698 0.0
AT2G46290.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1428 0.0
AT5G57650.1 | Symbols: | eukaryotic translation initiation fac... 145 1e-33
> AT2G46280.1 | Symbols: TRIP-1, TIF3I1 | TGF-beta receptor interacting
protein 1 | chr2:19003426-19005536 REVERSE LENGTH=1360
Length=1360
Score = 1698 bits (919), Expect = 0.0
Identities = 1054/1120 (94%), Gaps = 5/1120 (0%)
Strand=Plus/Plus
Query 1 CAAACCCTAGGAAATTGAAGATGAGGCCGATCTTGATGAAGGGACATGAACGTCCATTGA 60
||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 124 CAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGGACATGAACGTCCATTGA 183
Query 61 CGTTCCTCAGGTACAACAAAGATGGCGATCTACTTTTCTCTTGCGCCAAGGATCACACTC 120
|||| || |||||||||| ||| || ||||| |||||||| ||||||||||| ||||| |
Sbjct 184 CGTTTCTGAGGTACAACAGAGAAGGAGATCTGCTTTTCTCCTGCGCCAAGGACCACACAC 243
Query 121 CCACCCTCTGGTTTGCCGATAACGGCGAGCGCCTTGGCACATACCGTGGCCACAACGGTG 180
||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 244 CCACCCTCTGGTTTGCCGATAACGGCGAGCGCCTTGGAACTTACCGTGGTCACAACGGTG 303
Query 181 CTGTTTGGTGCTGTGATGTCTCCCGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CTGTTTGGTGCTGTGATGTCTCCCGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATC 363
Query 241 AGACTGCAAAGCTCTGGGATGTGAAATCTGGAAAAGAATTGTTCACATTCAAGTTTGGTT 300
||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||| |
Sbjct 364 AGACTGCAAAGCTGTGGGATGTAAAATCTGGAAAAGAATTGTTCACTTTCAAGTTTAATG 423
Query 301 CCCCTACGAGGTCTGTGGATTTCGCTGTTGGAGATCATCTTGCAGTGATTACCACTGATT 360
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 424 CCCCTACGAGGTCTGTGGATTTCGCTGTTGGAGATCGTCTTGCAGTGATTACCACTGATC 483
Query 361 ACTTCGTGGACCGTATGGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAAGACC 420
||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 484 ACTTCGTGGACCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC 543
Query 421 AGGTTAG-TGATTCTGTGCTTGTCCTTCAATGCCCTGACGGAAAGAAGAGGATCAATAGA 479
||| | | ||| ||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 544 AGGAT-GCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGATCAATAGA 602
Query 480 GCTGTTTGGGGTCCCCTGAATCAAACTATTGTTAGTGCTGGTGAAGATACTGTTATCAGA 539
|||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||
Sbjct 603 GCTGTTTGGGGTCCCCTGAACCAAACTATTGTTAGTGGTGGTGAAGATAAAGTTATCAGA 662
Query 540 ATCTGGGATACGGAGACTGGAAAATTGCTCAATG-AAACAAATGAGGAAGTGGGTCACAA 598
||||||||| | ||||| |||||||||||||| | || || |||||||||||||||||||
Sbjct 663 ATCTGGGATGCCGAGACGGGAAAATTGCTCAA-GCAATCAGATGAGGAAGTGGGTCACAA 721
Query 599 GAAGGCCATTACATCGCTCTGTAAAGCAGCTGATGATTCTCACTTCCTTACAGGTTCACA 658
||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 722 GAAGGACATTACATCGCTCTGCAAAGCAGCTGATGACTCTCACTTCCTTACAGGTTCACT 781
Query 659 TGACAAAACTGCAAAGCTTTGGGACATGAGAACGCTGACTCTTATTAAGACTTACACCAC 718
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 782 TGACAAAACTGCAAAGCTTTGGGACATGAGAACGCTGACTCTTCTTAAGACTTACACCAC 841
Query 719 TGGGGTGCCCGTAAATGCTGTCGCCATGTCTCCCCTTCTCAACCATGTTGTCCTTGGAGG 778
|| ||||||||||||||||||| || ||||||| ||||||||||||||||| ||||||||
Sbjct 842 TGTGGTGCCCGTAAATGCTGTCTCCCTGTCTCCACTTCTCAACCATGTTGTACTTGGAGG 901
Query 779 TGGTCAAGATGCATCAGCTGTGACTACCACTGATCATCGTGCTGGAAAGTTTGAAGCTAA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 TGGTCAAGATGCATCAGCTGTGACTACCACTGATCATCGTGCTGGAAAGTTTGAAGCTAA 961
Query 839 GTTTTATGACAAGATTCTGCAAGAGGAAATTGGTGGTGTGAAAGGTCATTTTGGACCTAT 898
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 GTTTTACGACAAGATTCTGCAAGAGGAAATTGGTGGTGTGAAAGGTCATTTTGGACCTAT 1021
Query 899 AAATGCTTTGGCATTCAATCCTGATGGGAAGAGTTTCTCCAGTGGAGGTGAAGACGGTTA 958
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1022 AAATGCTTTGGCATTCAATCCTGATGGGAAGAGTTTCTCTAGTGGAGGTGAAGACGGTTA 1081
Query 959 CGTGAGGCTGCATCATTTTGACTCCGACTACTTCAACATCAAGATTTAGATTCCGACTAC 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 CGTGAGGCTGCATCATTTTGACTCCGACTACTTCAACATCAAGATTTAGATTCCGACTAC 1141
Query 1019 TTCAACATCAAAGATTTTAGATTCTTTGAAAAAGTCTCCCATTCCGGAttttgttttctc 1078
|| ||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1142 TTGAACGTCAACC-TTTTAGAATCTTTGAAAAAGTCTCCCATTCCGGATTTTGTTTTCTC 1200
Query 1079 gcttttttaacattttcatgtttttATGTACTACCAATAC 1118
|| ||||||||||||||||||||||| ||||||||||||
Sbjct 1201 TCTCTTTTAACATTTTCATGTTTTTATTTACTACCAATAC 1240
> AT2G46290.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr2:19005771-19007879 REVERSE LENGTH=1289
Length=1289
Score = 1428 bits (773), Expect = 0.0
Identities = 936/1015 (92%), Gaps = 10/1015 (1%)
Strand=Plus/Plus
Query 1 CAAACCCTAGGAAATTGAAGATGAGGCCGATCTTGATGAAGGGACATGAACGTCCATTGA 60
||||||||| |||| || |||||||||||| ||||||||||||||||||||||||||||
Sbjct 146 CAAACCCTA-GAAA-CGAGGATGAGGCCGATTTTGATGAAGGGACATGAACGTCCATTGA 203
Query 61 CGTTCCTCAGGTACAACA-AAGATGGCGATCTACTTTTCTCTTGCGCCAAGGATCACACT 119
||||||| |||||||||| || |||| ||||| |||||||| |||||||| || ||||||
Sbjct 204 CGTTCCTGAGGTACAACAGAA-ATGGTGATCTGCTTTTCTCCTGCGCCAAAGACCACACT 262
Query 120 CCCACCCTCTGGTTTGCCGATAACGGCGAGCGCCTTGGCACATACCGTGGCCACAACGGT 179
||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| |||
Sbjct 263 CCCACAGTCTGGTTTGCCGATAACGGCGAGCGTCTTGGCACTTACCGTGGCCACAGTGGT 322
Query 180 GCTGTTTGGTGCTGTGATGTCTCCCGAGACTCGTCAAGATTGATCACTGGTAGTGCTGAT 239
|||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||
Sbjct 323 GCTGTTTGGTGCTGTGATATCTCCAGAGACTCGTCTAGATTGATCACTGGTAGTGCTGAT 382
Query 240 CAGACTGCAAAGCTCTGGGATGTGAAATCTGGAAAAGAATTGTTCACATTCAAGTTTGGT 299
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 383 CAGACTGCAAAGCTGTGGGATGTGAAATCTGGCAAAGAATTGTTCACTTTCAAGTTTGGT 442
Query 300 TCCCCTACGAGGTCTGTGGATTTCGCTGTTGGAGATCATCTTGCAGTGATTACCACTGAT 359
||||| | ||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 443 GCCCCTGCAAGGTCTGTGGATTTCTCTGTTGGTGATCATCTTGCAGTGATTACCACTGAT 502
Query 360 TACTTCGT-GGACCGTAT-GGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAAG 417
||||||| ||| | | | ||||||||||||| || || ||||| |||||||| ||||
Sbjct 503 CACTTCGTGGGAAC-T-TCCTCTGCTATTCATGTCAAACGCATTGCAGAAGATCCCGAAG 560
Query 418 ACCAGGTTAGTGATTCTGTGCTTGTCCTTCAATGCCCTGACGGAAAGAAGAGGATCAATA 477
|||||||| ||||||||||||||||||||||| | ||||| |||||||||| ||||||||
Sbjct 561 ACCAGGTTGGTGATTCTGTGCTTGTCCTTCAAAGTCCTGATGGAAAGAAGAAGATCAATA 620
Query 478 GAGCTGTTTGGGGTCCCCTGAATCAAACTATTGTTAGTGCTGGTGAAGATACTGTTATCA 537
|||||||||||||||||||||| ||||| |||||||||| |||||||||| ||| |||||
Sbjct 621 GAGCTGTTTGGGGTCCCCTGAACCAAACCATTGTTAGTGGTGGTGAAGATGCTGCTATCA 680
Query 538 GAATCTGGGATACGGAGACTGGAAAATTGCTCAATG-AAACAAATGAGGAAGTGGGTCAC 596
||||||||||| | ||||||||||||||||| || | || || |||||||||||||||||
Sbjct 681 GAATCTGGGATGCAGAGACTGGAAAATTGCTTAA-GCAATCAGATGAGGAAGTGGGTCAC 739
Query 597 AAGAAGGCCATTACATCGCTCTGTAAAGCAGCTGATGATTCTCACTTCCTTACAGGTTCA 656
||| ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 740 AAGGAGGCCATTACATCCCTCTGCAAAGCAGCTGATGACTCTCACTTCCTTACAGGTTCA 799
Query 657 CATGACAAAACTGCAAAGCTTTGGGACATGAGAACGCTGACTCTTATTAAGACTTACACC 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 CATGACAAAACTGCAAAGCTTTGGGACATGAGAACGCTGACTCTTATTAAGACTTACACC 859
Query 717 ACTGGGGTGCCCGTAAATGCTGTCGCCATGTCTCCCCTTCTCAACCATGTTGTCCTTGGA 776
|||| |||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 860 ACTGTGGTGCCTGTAAATGCTGTCGCCATGTCTCCACTTCTCAACCATGTTGTGCTTGGA 919
Query 777 GGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCATCGTGCTGGAAAGTTTGAAGCT 836
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 920 GGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCATCGTGCTGGGAAGTTTGAAGCT 979
Query 837 AAGTTTTATGACAAGATTCTGCAAGAGGAAATTGGTGGTGTGAAAGGTCATTTTGGACCT 896
|||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 980 AAGTTTTACGACACGATTCTGCAAGAGGAAATTGGTGGCGTGAAAGGTCATTTTGGACCT 1039
Query 897 ATAAATGCTTTGGCATTCAATCCTGATGGGAAGAGTTTCTCCAGTGGAGGTGAAGACGGT 956
|| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1040 ATTAATGCTTTGGCATTCAGTCCTGATGGGAAGAGTTTCTCTAGTGGAGGTGAAGACGGC 1099
Query 957 TACGTGAGGCTGCATCATTTTGACTCCGACTACTTCAACATCAAGATTTAGATTC 1011
|||||||| |||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1100 TACGTGAGACTGCATCATTTTGACTCCAATTACTTCAACATCAAGATTTAGATTC 1154
> AT5G57650.1 | Symbols: | eukaryotic translation initiation factor-related
| chr5:23345797-23346285 REVERSE LENGTH=147
Length=147
Score = 145 bits (78), Expect = 1e-33
Identities = 87/91 (96%), Gaps = 1/91 (1%)
Strand=Plus/Plus
Query 326 TGTTGGAGATCATCTTGCAGTGATTACCACTGATTACTTCGTGGACCGTATGGCTGCTAT 385
||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 57 TGTTGAAGATCATCTTGCAGTGATTACCACTGATCACTTCATGGACCGTATGGCTGCTAT 116
Query 386 TCATGT-GAAGCGTATTGCGGAAGATCCTGA 415
|||||| ||||||||||||||||||||||||
Sbjct 117 TCATGTTGAAGCGTATTGCGGAAGATCCTGA 147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54869195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5