BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935605

Length=424
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G46375.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   488    2e-137


> AT2G46375.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G61660.1); 
Has 12 Blast hits to 12 proteins in 4 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:19037864-19038379 
FORWARD LENGTH=516
Length=516

 Score =  488 bits (264),  Expect = 2e-137
 Identities = 366/414 (88%), Gaps = 12/414 (3%)
 Strand=Plus/Plus

Query  1    AACTCTTCAGTCCTTGACTAATGACGAAAAACACAAGAAACACCGGTGGAAGGAGCTCAC  60
            |||||| |||||||||| ||||| |   |||||||||  ||  | ||||||| |||||| 
Sbjct  75   AACTCTCCAGTCCTTGAATAATG-C--CAAACACAAG--AC-TCTGTGGAAGTAGCTCAG  128

Query  61   AAGAGAAGATTAGTGATGGTCGTGATCCTAACATCTGGGACTGTGAGAGTACTCTCTACG  120
            ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct  129  AAGAGAAGATTAGTGATGGTCGTGATCCTAAAATCTGGGACTGTGATAGTACTCTCTATG  188

Query  121  ATTCCTACGAACTTGTCTCTTTTGTTCACATCATCGAACGTAAACTAATGCCTTACTCTC  180
            ||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct  189  ATTCCTACGAACTCGTCTCCTTTGTTCACATCATCGAACGTAAACTAATGCCTTTCTCTC  248

Query  181  CTCTCGCTCCGAAGTCTGGTTTGAGTCTACGAGCGGTGATGGATAAAGATAACGACGACT  240
            ||||||||| | || ||||||||| |||||||||  ||||||||||||||| |||| | |
Sbjct  249  CTCTCGCTCGGCAGCCTGGTTTGACTCTACGAGCTTTGATGGATAAAGATAGCGACCATT  308

Query  241  GTTCCTCTGCGTCGACTAAGAGGGGGCGTTGTATTCACCGGAGGAAATATTGGTGgaaca  300
            |||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||  
Sbjct  309  GTTCCTGTGCGTCGACTAAGAGGGGACCTTGTATTCACCGGAGGAAATATTGGTGGAATG  368

Query  301  gaaagaagaacgacgaaatgaaggaacgaatacataagaagaagaagaagaTGTTTGATT  360
            |||||||||| |||||||||||||||||||| || |  ||||||||||   |||||||||
Sbjct  369  GAAAGAAGAAAGACGAAATGAAGGAACGAAT-CA-AT-AAGAAGAAGA---TGTTTGATT  422

Query  361  GTAGTCTTTGGTGGAATTCGTGTTACAAGAACTTGTTCTTATAATATGTAAGCA  414
             |||| ||||||||||||  ||||  |||||||||||||| |||||||||||||
Sbjct  423  TTAGTTTTTGGTGGAATTTTTGTTGTAAGAACTTGTTCTTCTAATATGTAAGCA  476



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20107099600


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5