BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935609

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G46410.1 | Symbols: CPC | Homeodomain-like superfamily prote...   231    1e-60


> AT2G46410.1 | Symbols: CPC | Homeodomain-like superfamily protein 
| chr2:19049172-19050341 REVERSE LENGTH=584
Length=584

 Score =  231 bits (125),  Expect = 1e-60
 Identities = 136/141 (96%), Gaps = 1/141 (1%)
 Strand=Plus/Plus

Query  63   AGGTGGGAGTTGATCGCCGGAAGGATCCCGGGACGAACGCCGGAGGAGATAGAAAGATAT  122
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct  322  AGGTGGGAGTTGATCGCCGGAAGGATCCCGGGACGGACGCCGGAGGAGATAGAGAGATAT  381

Query  123  TGGCTTATGAAACACGGCGTCGTTTTTGCCAACAGACGAAGAGAGGTTTTTAGGAAATGA  182
            ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct  382  TGGCTTATGAAACACGGCGTCGTTTTTGCCAACAGACGAAGAGACTTTTTTAGGAAATGA  441

Query  183  ttttttttGTTTGGAT-AAAA  202
            |||||||||||||||| ||||
Sbjct  442  TTTTTTTTGTTTGGATTAAAA  462



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9003941829


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5