BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935612
Length=2072
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46450.1 | Symbols: ATCNGC12, CNGC12 | cyclic nucleotide-gat... 835 0.0
AT2G46440.1 | Symbols: ATCNGC11, CNGC11 | cyclic nucleotide-gat... 830 0.0
AT3G08020.1 | Symbols: | PHD finger family protein | chr3:2557... 422 9e-117
AT5G65780.2 | Symbols: ATBCAT-5 | branched-chain amino acid ami... 119 1e-25
AT5G65770.2 | Symbols: LINC4 | little nuclei4 | chr5:26311587-2... 119 1e-25
> AT2G46450.1 | Symbols: ATCNGC12, CNGC12 | cyclic nucleotide-gated
channel 12 | chr2:19065716-19069569 FORWARD LENGTH=3199
Length=3199
Score = 835 bits (452), Expect = 0.0
Identities = 553/601 (92%), Gaps = 9/601 (1%)
Strand=Plus/Plus
Query 520 GTTGATGGAAAATTCAAAAGTGGTAGAGGACGCTTGAAGAAATTTTACCGGAAGATGAAA 579
|||||||||||||| ||||||| |||||||||||||||||| ||||| |||||||||||
Sbjct 175 GTTGATGGAAAATTGAAAAGTGTTAGAGGACGCTTGAAGAAGGTTTACGGGAAGATGAAA 234
Query 580 ACACTCGAAAACTGGAGGAAGACTGTCTTGTTAGCTTGCGTGGTTGCTTTGGCTATTGAT 639
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 235 ACACTCGAAAACTGGAGGAAGACCGTCTTGTTAGCTTGCGTGGTTGCTTTGGCTATTGAT 294
Query 640 CCTTTGTTTCTTTTTATCCCTTTGATTGATTCTCATAGATTTTGTTTCACTTTCGACAAG 699
||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 295 CCTTTGTTTCTGTTTATCCCTTTGATTGATTCTCAGAGATTTTGCTTCACTTTCGACAAG 354
Query 700 ACAGTTGTGGCAGTAGTTTGTGTCATTCGTACTTTAATTGACACATTCTATGTCATTCAC 759
||| |||| |||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 355 ACACTTGTAGCAGTAGTTTGTGTCATTCGTACTTTTATTGACACGTTCTATGTGATTCAC 414
Query 760 ATCATTTATTATCTTATAACCGAGATTATTGCTCCTCGTTCTCAAGCATCTTTGAGAGGC 819
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 415 ATCATTTATTATCTTATAACCGAGACCATTGCTCCTCGTTCTCAAGCATCTTTGAGAGGC 474
Query 820 AAGACTGTCGAGCATTCTAAGGATACTA-TGAAAACACGTCTCCTCTTTCGCTTCATGGT 878
||| ||||| ||||||||||| ||| | ||||||||||||||||||||| |||||| ||
Sbjct 475 GAGATTGTCGTGCATTCTAAGGCTAC-ACTGAAAACACGTCTCCTCTTTCACTTCATTGT 533
Query 879 TGATATTTTCTCTGTTCTCCCCATTCCTCAGGTGGTGGTTGTCACTCTCATTCCAC-GAT 937
||| ||| |||||||||||||||||||||||||||||||| |||||||||| |||| | |
Sbjct 534 TGACATTATCTCTGTTCTCCCCATTCCTCAGGTGGTGGTTCTCACTCTCATACCACTG-T 592
Query 938 CTGCCTCGCTGGTGTCAGAG-GAAATACTGAAATGGATTATACTTTGTCAATATTTACCA 996
|||| ||||||||||||||| ||| |||||||||||||||||||| |||||||| |||||
Sbjct 593 CTGCGTCGCTGGTGTCAGAGAGAA-TACTGAAATGGATTATACTTAGTCAATATGTACCA 651
Query 997 AGGATCATTCGTATGTATCCGCTTTACAAAGAAGTGACAGGAGCCGTTGGTACGGTAGCA 1056
|| ||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||
Sbjct 652 AGAATCATTCGTATGTATCCGCTTTATAAAGAAGTGACAAGAGCCTTTGGTACGGTAGCA 711
Query 1057 GAATCAAAGTGGATTAATGCAGCTTCTTTAAACTTTTTCCTTTACATTCTGCACAGTTAT 1116
|||||||||||| | | |||| |||||||||| ||||||||||| ||||||||||||
Sbjct 712 GAATCAAAGTGGGCTG--G-AGCTGCTTTAAACTTATTCCTTTACATGCTGCACAGTTAT 768
Query 1117 G 1117
|
Sbjct 769 G 769
Score = 538 bits (291), Expect = 8e-152
Identities = 354/384 (92%), Gaps = 6/384 (2%)
Strand=Plus/Plus
Query 1465 GTTCCATGGCTTAGCTTCATGGATGATGGTTGGCTACTAGAAGCTGTGTGCGACCGGGTG 1524
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 GTTCCATGGCTTAACATCATGGATGATGGTTGGCTACTAGAAGCTGTGTGCGACCGGGTG 1485
Query 1525 AAGCCTGTGTTCTACTCAGCGAACAGCTACATAGTGAGAGAGGGGCACCCAGTTGAGGAA 1584
||| |||||||||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1486 AAGTCTGTGTTCTATTTAGCGAACAGCTTCATAGTGAGAGAGGGGCACCCAGTTGAGGAG 1545
Query 1585 ATGCTGATTGTAACGAGAGGTAAGCTGAAAAGTAGTACATCCGGATCTCATGAAATAGGT 1644
|||||||||||||||||||| ||||||||||||| | | |||||||||||||||| |||
Sbjct 1546 ATGCTGATTGTAACGAGAGGCAAGCTGAAAAGTAC-A-A-CCGGATCTCATGAAATGGGT 1602
Query 1645 GGCCGCGGCTACAATTGTTGTTTCCTCGAAGCTGGTGACATATGTGGAGAACTTCTCTTC 1704
| |||| ||||||||||| |||| ||| ||||||||||||||||||||||||||||
Sbjct 1603 GTCCGCA---ACAATTGTTGTGACCTCCAAGATGGTGACATATGTGGAGAACTTCTCTTC 1659
Query 1705 AATGGTTCTCGCCTTCCCACCTCAACCAGAACCGTAATGACTATGACTGAAGTTGAAGGC 1764
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1660 AATGGTTCTCGCCTTCCTACCTCAACCAGAACCGTAATGACTTTGACTGAAGTTGAAGGT 1719
Query 1765 TTCATTCTCTTGCCTGATGATGTCAATTTTATAGCTTCTCATTTAAATGTCTTTCAACGA 1824
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||
Sbjct 1720 TTCATTCTCTTGCCTGATGATATCAAGTTTATAGCTTCTCATTTAAATGTCTTTCAAAGA 1779
Query 1825 CAGAAACTCCAACAAACATTCAGG 1848
|| |||||||||| ||||||||||
Sbjct 1780 CAAAAACTCCAACGAACATTCAGG 1803
Score = 483 bits (261), Expect = 4e-135
Identities = 324/353 (92%), Gaps = 9/353 (3%)
Strand=Plus/Plus
Query 1117 GACATCCGGCTGCCATCAT-ATC--TCA-GGAATCTGATTTGTAAACGAGGTGGCGGAGA 1172
|||||||| |||| ||| | | | ||| || ||||| |||||||||||| |||| | ||
Sbjct 840 GACATCCGACTGCAATC-TCA-CGGTCACGG-ATCTGCTTTGTAAACGAGCTGGCAGTGA 896
Query 1173 CAATAGTCGTTTCCTGAACACTTCATGCCCATTAATCGACCCTGACAAAATCACAAACTC 1232
||| | ||| ||||| |||||||||||||||||||||||||||| | |||||||||||||
Sbjct 897 CAACATTCGATTCCTCAACACTTCATGCCCATTAATCGACCCTGCCCAAATCACAAACTC 956
Query 1233 CACAGACTTCGACTTTGGTTTGTACATTGATGCATTGAAGTCAGGGGTGCTAGAGGTGAA 1292
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 957 CACAGACTTCGACTTTGGTATGTATATTGATGCATTGAAGTCAGGGGTGCTAGAGGTGAA 1016
Query 1293 ACCAAGGGATTTTCCGAGGAAATTCGTCTATTGCTTTTGGTGGGGTCTTCGTAATATTAG 1352
||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1017 ACCAAAGGATTTTCCCAGGAAATTCGTCTATTGCTTTTGGTGGGGTCTCCGTAATATTAG 1076
Query 1353 TGCTTTGGGCCAAAACCTGCAGACAAGCAACTCTACAGGGGAGATTATT-TTTGCTATCA 1411
||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||
Sbjct 1077 TGCTTTGGGCCAAAACCTGGAGACAAGCAACTCTGCAGGGGAGATT-TTCTTTGCTATCA 1135
Query 1412 TCATATGTGTCTCTGGTTTACTCTTGTTTGCTGTGCTCATTGCAAACGTTCAG 1464
|||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1136 TCATATGTGTCTCTGGTTTACTCTTGTTTGCTGTGCTCATTGGAAACGTTCAG 1188
> AT2G46440.1 | Symbols: ATCNGC11, CNGC11 | cyclic nucleotide-gated
channels | chr2:19061861-19064881 FORWARD LENGTH=2340
Length=2340
Score = 830 bits (449), Expect = 0.0
Identities = 552/601 (92%), Gaps = 9/601 (1%)
Strand=Plus/Plus
Query 520 GTTGATGGAAAATTCAAAAGTGGTAGAGGACGCTTGAAGAAATTTTACCGGAAGATGAAA 579
|||||||||||||| ||||||| |||||||||||||||||| ||||| |||||||||||
Sbjct 267 GTTGATGGAAAATTGAAAAGTGTTAGAGGACGCTTGAAGAAGGTTTACGGGAAGATGAAA 326
Query 580 ACACTCGAAAACTGGAGGAAGACTGTCTTGTTAGCTTGCGTGGTTGCTTTGGCTATTGAT 639
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 327 ACACTCGAAAACTGGAGGAAGACCGTCTTGTTAGCTTGCGTGGTTGCTTTGGCTATTGAT 386
Query 640 CCTTTGTTTCTTTTTATCCCTTTGATTGATTCTCATAGATTTTGTTTCACTTTCGACAAG 699
||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 387 CCTTTGTTTCTGTTTATCCCTTTGATTGATTCTCAGAGATTTTGCTTCACTTTCGACAAG 446
Query 700 ACAGTTGTGGCAGTAGTTTGTGTCATTCGTACTTTAATTGACACATTCTATGTCATTCAC 759
||| |||| |||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 447 ACACTTGTAGCAGTAGTTTGTGTCATTCGTACTTTTATTGACACGTTCTATGTGATTCAC 506
Query 760 ATCATTTATTATCTTATAACCGAGATTATTGCTCCTCGTTCTCAAGCATCTTTGAGAGGC 819
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 507 ATCATTTATTATCTTATAACCGAGACCATTGCTCCTCGTTCTCAAGCATCTTTGAGAGGC 566
Query 820 AAGACTGTCGAGCATTCTAAGGATACTA-TGAAAACACGTCTCCTCTTTCGCTTCATGGT 878
||| ||||| ||||||||||| ||| | ||||||||||||||||||||| |||||| ||
Sbjct 567 GAGATTGTCGTGCATTCTAAGGCTAC-ACTGAAAACACGTCTCCTCTTTCACTTCATTGT 625
Query 879 TGATATTTTCTCTGTTCTCCCCATTCCTCAGGTGGTGGTTGTCACTCTCATTCCAC-GAT 937
||| ||| |||||||||||||||||||||||||||||||| |||||||||| |||| | |
Sbjct 626 TGACATTATCTCTGTTCTCCCCATTCCTCAGGTGGTGGTTCTCACTCTCATACCACTG-T 684
Query 938 CTGCCTCGCTGGTGTCAGAG-GAAATACTGAAATGGATTATACTTTGTCAATATTTACCA 996
|||| ||||||||||||||| ||| |||||||||||||||||||| |||||||| |||||
Sbjct 685 CTGCGTCGCTGGTGTCAGAGAGAA-TACTGAAATGGATTATACTTAGTCAATATGTACCA 743
Query 997 AGGATCATTCGTATGTATCCGCTTTACAAAGAAGTGACAGGAGCCGTTGGTACGGTAGCA 1056
|| ||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||
Sbjct 744 AGAATCATTCGTATGTATCCGCTTTATAAAGAAGTGACAAGAGCCTTTGGTACGGTAGCA 803
Query 1057 GAATCAAAGTGGATTAATGCAGCTTCTTTAAACTTTTTCCTTTACATTCTGCACAGTTAT 1116
||||||||| || | | |||| |||||||||| ||||||||||| ||||||||||||
Sbjct 804 GAATCAAAGCGGGTCG--G-AGCTGCTTTAAACTTCTTCCTTTACATGCTGCACAGTTAT 860
Query 1117 G 1117
|
Sbjct 861 G 861
Score = 460 bits (249), Expect = 2e-128
Identities = 320/353 (91%), Gaps = 9/353 (3%)
Strand=Plus/Plus
Query 1117 GACATCCGGCTGCCATCAT-ATC--TCA-GGAATCTGATTTGTAAACGAGGTGGCGGAGA 1172
|||||||| |||| ||| | | | ||| || ||||| |||||||||||| ||| | ||
Sbjct 932 GACATCCGACTGCAATC-TCA-CGGTCACGG-ATCTGCTTTGTAAACGAGCTGGTAGTGA 988
Query 1173 CAATAGTCGTTTCCTGAACACTTCATGCCCATTAATCGACCCTGACAAAATCACAAACTC 1232
||| | |||||| || ||||| |||||||||||||||||||||| | |||||||||||||
Sbjct 989 CAACATTCGTTTTCTCAACACCTCATGCCCATTAATCGACCCTGCCCAAATCACAAACTC 1048
Query 1233 CACAGACTTCGACTTTGGTTTGTACATTGATGCATTGAAGTCAGGGGTGCTAGAGGTGAA 1292
||||||||||||||||||| |||| |||||||| |||||||||||||| |||||||||||
Sbjct 1049 CACAGACTTCGACTTTGGTATGTATATTGATGCGTTGAAGTCAGGGGTCCTAGAGGTGAA 1108
Query 1293 ACCAAGGGATTTTCCGAGGAAATTCGTCTATTGCTTTTGGTGGGGTCTTCGTAATATTAG 1352
||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1109 ACCAAAGGATTTTCCCAGGAAATTCGTCTATTGCTTTTGGTGGGGTCTCCGTAATATTAG 1168
Query 1353 TGCTTTGGGCCAAAACCTGCAGACAAGCAACTCTACAGGGGAGATTATT-TTTGCTATCA 1411
||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||
Sbjct 1169 TGCTTTGGGCCAAAACCTGGAGACAAGCAACTCTGCAGGGGAGATT-TTCTTTGCTATCA 1227
Query 1412 TCATATGTGTCTCTGGTTTACTCTTGTTTGCTGTGCTCATTGCAAACGTTCAG 1464
|||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1228 TCATATGTGTCTCTGGTTTACTCTTGTTTGCTGTGCTCATTGGAAACGTTCAG 1280
> AT3G08020.1 | Symbols: | PHD finger family protein | chr3:2557437-2561802
REVERSE LENGTH=2924
Length=2924
Score = 422 bits (228), Expect = 9e-117
Identities = 304/338 (90%), Gaps = 16/338 (5%)
Strand=Plus/Plus
Query 92 GTCGTCGGATCTGCTATTGCTCCTTAGGG--TT-T-----TCT-CGTGGAGCCAATGCGA 142
|||||||||| ||| |||||||||||||| || | ||| ||||||||||||||||
Sbjct 300 GTCGTCGGATTTGCCATTGCTCCTTAGGGTTTTCTCGGGATCTCCGTGGAGCCAATGCGA 359
Query 143 AAGAGGAGTTTTTGAAAGAGGTTAATCGAGTGGAGGAGTTTCTCAAGGATCCTTG-TGTT 201
|| | |||||||||||||||||| ||||||||||||||||||||||||||| || ||||
Sbjct 360 AACATAAGTTTTTGAAAGAGGTTATTCGAGTGGAGGAGTTTCTCAAGGATCC-TGCTGTT 418
Query 202 TCTTCCAAGGTTTTCAATGGAGATACCGTTCAGGTTAGGGTTCCTAAGGTAGTTCCTGCT 261
||||| || ||||| | ||||| ||||||||| ||||||||||||||||| |||||||||
Sbjct 419 TCTTCTAATGTTTTTATTGGAGGTACCGTTCAAGTTAGGGTTCCTAAGGTTGTTCCTGCT 478
Query 262 CCTCAGACGGCTTCGATTTTGGGGGTTGGAATGGAGATGGTGCTATTGGTTCTGGAGTTG 321
|||||||||| |||||||||||||| | |||||||||||||||||||||||| ||||
Sbjct 479 CCTCAGACGGTTTCGATTTTGGGGG-T----TGGAGATGGTGCTATTGGTTCTGGTGTTG 533
Query 322 ATGAATTGGCGGAGGAAGCTTCTGCTCAGAAGAAACGTGTTGCTCTTCAGAAACAAGCTG 381
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 534 ATGAATTGGCGGAGGAAGCTTCTGCTCAGAAGAAACGTGTTGCTCTTCAGAGACAAGCTG 593
Query 382 CTGTTACGGTCGAAGCTGCTGAGGATTATGCTCGTAGG 419
||||||| |||||||||||||||||||||||||| |||
Sbjct 594 CTGTTACTGTCGAAGCTGCTGAGGATTATGCTCGGAGG 631
> AT5G65780.2 | Symbols: ATBCAT-5 | branched-chain amino acid aminotransferase
5 / branched-chain amino acid transaminase 5
(BCAT5) | chr5:26311311-26316025 FORWARD LENGTH=3579
Length=3579
Score = 119 bits (64), Expect = 1e-25
Identities = 70/73 (96%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 417 AGGGAATCTTCGCTACTTAAGAAGGAGCAAGAGCTGCTTGTTGCTGAAGAAACAGTTGCC 476
|||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||
Sbjct 1264 AGGGAATCTTCGCTACTTAAGAAGGAGCAAGAACTGCTTGTTGCTGAAGAAAAAATTGCC 1323
Query 477 AGCAAGGAATCTG 489
|||||||||||||
Sbjct 1324 AGCAAGGAATCTG 1336
> AT5G65770.2 | Symbols: LINC4 | little nuclei4 | chr5:26311587-26315544
FORWARD LENGTH=3129
Length=3129
Score = 119 bits (64), Expect = 1e-25
Identities = 70/73 (96%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 417 AGGGAATCTTCGCTACTTAAGAAGGAGCAAGAGCTGCTTGTTGCTGAAGAAACAGTTGCC 476
|||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||
Sbjct 1045 AGGGAATCTTCGCTACTTAAGAAGGAGCAAGAACTGCTTGTTGCTGAAGAAAAAATTGCC 1104
Query 477 AGCAAGGAATCTG 489
|||||||||||||
Sbjct 1105 AGCAAGGAATCTG 1117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102710315070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5