BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg935615

Length=774
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G28223.1 | Symbols:  | F-box family protein | chr3:10527477-...   128    8e-29


> AT3G28223.1 | Symbols:  | F-box family protein | chr3:10527477-10528961 
REVERSE LENGTH=1408
Length=1408

 Score =  128 bits (69),  Expect = 8e-29
 Identities = 148/186 (80%), Gaps = 5/186 (3%)
 Strand=Plus/Plus

Query  39   GATCTATTGG-AAATTATACTAGCGAGGTTACCGA-TTAAGAGCATAACAACTTGCAACT  96
            |||||  ||| ||| |||| ||||||| ||||| | | |||||||| ||| ||| || ||
Sbjct  86   GATCTCGTGGTAAA-TATATTAGCGAGATTACC-ACTAAAGAGCATCACAGCTTTCACCT  143

Query  97   TGGTTTGCAAGGAATGGAAATCAATAGTGGAATCTGAGTTTCTCCGGGAGCTTTTCCTTT  156
            |||||||||||||||||||||||||||| |||||| | | ||| |  || |||||  | |
Sbjct  144  TGGTTTGCAAGGAATGGAAATCAATAGTCGAATCTCAATATCTACACGAACTTTTTATGT  203

Query  157  CTCACCATAAAAAATCGCATTCTTCGTGGTCGCTCATATGCACCGAATCTAAGAAAGAAG  216
            |||| ||| || | |||||| |||| ||||| ||||| ||||  ||| || | |||||||
Sbjct  204  CTCATCATCAAGACTCGCATCCTTCATGGTCACTCATGTGCAGAGAAACTCATAAAGAAG  263

Query  217  TC-TTG  221
            || |||
Sbjct  264  TCATTG  269



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37625376103


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5