BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935619
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46730.1 | Symbols: | pseudogene, similar to 68 kDa protein... 193 3e-48
AT2G46480.1 | Symbols: GAUT2, LGT2 | galacturonosyltransferase ... 172 4e-42
> AT2G46730.1 | Symbols: | pseudogene, similar to 68 kDa protein,
blastp match of 68% identity and 4.7e-17 P-value to GP|7271113|emb|CAB81547.1||AJ276420
68 kDa protein {Cicer arietinum}
| chr2:19200860-19203138 FORWARD LENGTH=2279
Length=2279
Score = 193 bits (104), Expect = 3e-48
Identities = 118/125 (94%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 453 ACTCCCCTGTGGTCCATAGATCTTAAAGGGAAAGTGAATGGTGCAGTAGAAACATGCGGT 512
||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1968 ACTTCCCTGTGGTCCATAGATCTTAAAGGGAAAGTGAATGGTGCAGTAGAGACCTGCGGT 2027
Query 513 GTCACTTTTCATCGCTTGGACACTTACTTAAACTTCAGTGATCAACACATTTCAGACAAC 572
|||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 2028 GTCACTTTCCATCGCTTGGACACTTACTAAAACTTCAGTGATCAACACATTTTAGACAAC 2087
Query 573 TCTGA 577
| |||
Sbjct 2088 TTTGA 2092
> AT2G46480.1 | Symbols: GAUT2, LGT2 | galacturonosyltransferase
2 | chr2:19076405-19078386 REVERSE LENGTH=1587
Length=1587
Score = 172 bits (93), Expect = 4e-42
Identities = 137/158 (87%), Gaps = 3/158 (2%)
Strand=Plus/Plus
Query 335 GTACCCTAATTACAAGTCAATGCTTAATCTCTTGAGGTTCTACATCTCAATAATCTTCCC 394
|||||| || |||| |||||||||||| | | |||||||||||||| | | ||||||||
Sbjct 1047 GTACCCGAAATACATGTCAATGCTTAACCACCTGAGGTTCTACATCCCTAGGATCTTCCC 1106
Query 395 CAAGTTAGAGAAAATCCTGCTTCTTGACGATGACGACGTGGTTGTTCAGAAGGATTTAAC 454
||||| ||||||||| || || |||||||| || |||||||||||||||||||||||
Sbjct 1107 AAAGTTGGAGAAAATCTTGTTTGTTGACGAT---GATGTGGTTGTTCAGAAGGATTTAAC 1163
Query 455 TCCCCTGTGGTCCATAGATCTTAAAGGGAAAGTGAATG 492
|||||| |||||||| ||||||||||||||||||||||
Sbjct 1164 TCCCCTATGGTCCATTGATCTTAAAGGGAAAGTGAATG 1201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43653473743
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5