BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935630
Length=487
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46505.1 | Symbols: SDH4 | succinate dehydrogenase subunit 4... 658 0.0
> AT2G46505.1 | Symbols: SDH4 | succinate dehydrogenase subunit
4 | chr2:19089729-19090549 REVERSE LENGTH=821
Length=821
Score = 658 bits (356), Expect = 0.0
Identities = 441/480 (92%), Gaps = 13/480 (3%)
Strand=Plus/Plus
Query 2 GATTCTCTCCTCCACCACGATGTCTCTCCGTCGCACTATCCTCGATCTCCACCGTCAAAC 61
|||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 63 GATTATCTCCTCGGCCACGATGTCTCTCCGCCGCACTATCCTCGATCTCCACCGTCAAAC 122
Query 62 CAACAGAGCCGCTCTCTCAAAGTCTCTACCTTTCTCGATGAGTCACATCTCCTCCG---- 117
| | |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 CCAGAGAGCCACTCTCTCAAAGTCTCTACCTTTCTCGATGAGTCACATCTCCTCCGCATC 182
Query 118 CG-----TCCGCCGTGAGAAACCCACTGGGAAGAGACATCTCTTCAATCCCATTCGCACT 172
|| ||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 183 CGCCACCGCCGCCGTGAGAAACCCACTGGGAAGAGACCTCTCTTCAATCCCCTTCGCACA 242
Query 173 AGCCCAGAAACTGAAACCAGAGTCAACCAATCTGGTCACCGATCGTTCGATATCATCTTC 232
||||||||||||||||||||| ||||||||||| ||||||||||| ||||| || |||||
Sbjct 243 AGCCCAGAAACTGAAACCAGATTCAACCAATCTCGTCACCGATCGCTCGATTTCGTCTTC 302
Query 233 AATTGGGCAATCTGATA-TCAACAAGGCAGCCAAATTCTCGCGCCTCTCGTCTTCTCGAG 291
||||||||||||||| | ||||||||||||||||||||||||| | |||||||||||||
Sbjct 303 AATTGGGCAATCTGA-ACTCAACAAGGCAGCCAAATTCTCGCGTCAATCGTCTTCTCGAG 361
Query 292 GTTACACTAACGCCTCTTTCTTACGCAAAATCCCTATACTCTTTCACATACATGAAGGAA 351
|||||||||| | |||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 362 GTTACACTAATGGCTCTTTCTTACGCAAAATCCCTGTAGTCTTTCACATACATGAAGGAA 421
Query 352 TGGAAGAGATTTTGGCGGATTATGTTCACCAAGAAATGACAAGGAATTTGATGGTGATCT 411
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 422 TGGAAGAGATTTTGGCGGATTATGTTCACCAAGAAATGACAAGGAATTTGATTGTGATGT 481
Query 412 CTTTGGGATTGTTCCAGATTATCGTT-TTCAAAGATATTGTCTTGTTTCTTCTCTGAAAC 470
|||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct 482 CTTTGGGATTGTTCCAGATTATCGTTCTT-AAAGATATTATCTTGTTTCTTCTCTGAAAC 540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23208175914
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5