BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935632
Length=2962
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46520.1 | Symbols: | cellular apoptosis susceptibility pro... 4824 0.0
> AT2G46520.1 | Symbols: | cellular apoptosis susceptibility protein,
putative / importin-alpha re-exporter, putative | chr2:19096768-19100272
FORWARD LENGTH=3418
Length=3418
Score = 4824 bits (2612), Expect = 0.0
Identities = 2834/2944 (96%), Gaps = 4/2944 (0%)
Strand=Plus/Plus
Query 1 TCTGTTGTCTTCTAAGAAAGATGGAGTGGAATCGGCAGACTCTAGAGTTCCTTTCGCAAT 60
|||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 80 TCTGTTGTTTTCTAAGAAAGATGGAGTGGAATCGGGAGACTCTAGTGTTCCTTTCGCAAT 139
Query 61 GTTTTCTTAACACGCTCTCTCCGATACCGGAGCCTCGTCGAACAGCTGAGAAAGCACTAT 120
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
Sbjct 140 GTTTTCTTAACACGCTCTCTCCGATACCGGAGCCTCGTCGAACGGCTGAGAGAGCACTCT 199
Query 121 CGGATGCCGCCGATCTA-CCTAACTACGGCCTTGCCGTTCTCCGGTTGGTGGCTGAGCCC 179
||||||| || |||| | ||||||||||||| ||||||||||| ||||||||||||||
Sbjct 200 CGGATGCTGCTGATC-AGGCTAACTACGGCCTAGCCGTTCTCCGTTTGGTGGCTGAGCCA 258
Query 180 GCAATCGACGAACAGACGCGTCACGCCGCTGCTGTCAACTTTAAGAACCATCTCCGTTCG 239
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 GCAATCGATGAACAGACGCGTCACGCCGCTGCTGTCAACTTTAAGAACCATCTCCGTTCG 318
Query 240 CGGTGGCTTCCTTCTGGTGATTCTGGTATCTCACCGATCGTTGATTCGGAGAAGGAGCAG 299
|| |||| |||| |||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 319 CGATGGCATCCTGCTGGTGATTCTGGTATCTCACCGATCGTAGATTCTGAGAAGGAGCAG 378
Query 300 ATCAAGACACTCATCGTCTCTCTTATGCTCTCTTCTTCTCCTCGTATCCAGAGCCAGTTG 359
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 379 ATCAAGACACTCATCGTCTCTCTTATGCTCTCTGCTTCTCCTCGTATCCAGAGCCAGTTG 438
Query 360 AGTGAAGCCCTAGCCGTCATTGGTAAGCACGATTTCCCCAAATCTTGGCCTGCTTTACTT 419
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 439 AGTGAAGCCCTAACCGTCATTGGTAAGCACGATTTCCCCAAAGCTTGGCCTGCTTTGCTT 498
Query 420 CCTGAGCTTATCGCCAACCTTCAAAAGGCTGCTCTCGCTGGCGATTATGTGTCCGTCAAT 479
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 499 CCTGAGCTTATCGCCAACCTTCAAAACGCTGCTCTCGCTGGCGATTATGTGTCCGTCAAT 558
Query 480 GGTATACTTGGGACCGCTAGTTCGATTTTCAAAAAGTTTAGGTATCAGTATAGAACCGAT 539
||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 559 GGTATTCTTGGGACCGCTAGTTCGATTTTCAAAAAGTTTAGTTATGAGTATAGAACCGAT 618
Query 540 GATCTGTTTCTTGATTTGAAGTATTGCTTGGATGGTTTTGCTGCTCCTTTGACTGAAATA 599
| ||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 619 GCTCTGTTTGTTGATTTGAAGTATTGCCTGGATAATTTTGCTGCTCCTTTGACTGAAATA 678
Query 600 TTCCTGAAAACGTCTTCGTTGATTGATTCTGCTGCGAGCTCTGGTGGGACAGCTGCGATC 659
||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 679 TTCCTGAAAACGTCTTCGTTGATTGATTCTGCTGCGAGCTCTGGTGGTTCACCTCCGATC 738
Query 660 CTGAAGCCTCTGTTTGAGTCCCAAAGGCTGTGCTGTAGAATATTTTACTCGTTGAACTTT 719
||||||||||| || |||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 739 CTGAAGCCTCTCTTCGAGTCCCAAAGGCTGTGCTGTACAATATTTTACTCTTTGAACTTT 798
Query 720 CAGGACTTACCGGAGTTTTTCGAGGACCATATGAACGAGTGGATGGGAGAGTTTAAGAAG 779
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 799 CAGGACTTACCGGAGTTTTTCGAGGATCATATGAAGGAGTGGATGGGAGAGTTTAAGAAG 858
Query 780 TATCTATCTTCAAATTATCCCGCCTTGGAAAGCACAGAAGAGGGGTTAACACTTGTTGAT 839
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 859 TATCTATCTTCAAATTATCCCGCCTTGGAAAGCACAGAGGAGGGGTTAACACTTGTTGAT 918
Query 840 GATCTTCGCGCTGCTATTTGCGAGAACATCAATCTTTATATCGAGAAAAACGAAGAAGAG 899
|||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||
Sbjct 919 GATCTTCGCGCTGCTATTTGCGAGAATATCAATCATTATATTGAGAAAAACGAAGAAGAG 978
Query 900 TTTCAAGGCTTTTTGAATGAGTTTGCATCAGTTGTCTGGACATTGCTCCGAGATGTGTCA 959
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 979 TTTCAAGGCTTTTTGAATGAGTTTGCATCAGTTGTCTGGACATTGCTCCGGGATGTGTCA 1038
Query 960 AAGTCTCCTAGCAGAGATCAGCTAGCTACTACAGCAATCAAGTTTTTGACCACTGTGAGC 1019
|||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||
Sbjct 1039 AAGTCTCCTAGCAGAGATCAACTAGCTACTACAGCAATCAAGTTCTTGACCTCTGTGAGC 1098
Query 1020 ACAAGTGTTCACCATGCTTTGTTTGCGGGCGACAATGTTATCAAGGAAATTTGCCAAAGT 1079
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1099 ACAAGTGTTCACCATGCTTTGTTTGCGGGGGACAATGTTATCAAGGAAATTTGCCAAAGT 1158
Query 1080 ATTGTGATTCCCAATGTTTCTTTGAGGGTGGAAGATGAAGAAATTTTCGAGATGAACTAT 1139
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 ATTGTGATTCCTAATGTTTCTTTGAGGGTGGAAGATGAAGAAATTTTCGAGATGAACTAT 1218
Query 1140 ATAGAGTTTATCCGTAGAGACATGGAGGGAAGTGATGTGGACACTAGAAGGAGAATAGCT 1199
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1219 ATTGAGTTTATCCGTAGAGATATGGAAGGAAGTGATGTGGACACTAGAAGGAGAATAGCT 1278
Query 1200 TGTGAGCTACTCAAAGGACTTGCTACAAACTACAAAACACAAGTGACAGAAGTAGTTTCT 1259
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1279 TGTGAGCTACTCAAAGGCCTTGCCACAAACTACAAAACACAAGTGACAGAAGTAGTTTCT 1338
Query 1260 CTTGAGATACAGAAGCTCTTGAGTTCATTTTCAGCAAATCCGTCTGCACACTGGAAAGAT 1319
||||||||||||| |||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct 1339 CTTGAGATACAGAGGCTCTTGAGTTCATTTTCAGCAAACCCGTCGGCAAACTGGAAAGAT 1398
Query 1320 AAGGATTGTGCAATTTACTTGGTTGTCTCTCTATCTACTAAGAAGGCAGGGGGTGCATCT 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 AAGGATTGTGCAATTTACTTGGTTGTCTCTCTATCTACTAAGAAGGCAGGGGGTGCATCT 1458
Query 1380 GTGTCTACAGATCTCATTGATGTTCAAAACTTCTTTACAAGCATTATTCTCCCGGAGCTG 1439
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1459 GTGTCTACAGATCTCATTGATGTTCAAAACTTCTTTGCAAACATTATTCTCCCGGAGCTG 1518
Query 1440 CAAAGCCGCGATGTCAACAGTTTTCCGATGCTAAAGGCAGGGTCCTTGAAGTTTTTAACA 1499
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 1519 CAAAGCCGCGATGTCAACAGCTTTCCAATGCTAAAGGCAGGGTCCTTGAAGTTCTTAACT 1578
Query 1500 ATGTTTCGTAGTCATATACCAAAGCCCTTTGCAATGCAGTTGTTCCCAGAGTTGGTCCGG 1559
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1579 ATGTTTCGTAGTCATATACCAAAGCCCTTTGCAATGCAGTTGTTCCCAGAGTTGGTCCGT 1638
Query 1560 TTCCTTAAAGCAGAGTCGAACGTGGTCCACTCTTATGCTGCTAGCTGCATAGAGAAGCTC 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1639 TTCCTTAAAGCAGAGTCGAACGTGGTCCACTCTTATGCTGCTAGCTGCATAGAGAAGCTC 1698
Query 1620 TTGCTAGTGAAGGAGGAAGGCGGAAGGGGTAACAGGTATGCTGCTGGTGATATAAGTCCG 1679
|||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||
Sbjct 1699 TTGCTAGTGAAGGAGGAAGGCGCAAGGGGTAATAGGTATGCTGCTGGTGATTTAAGTCCC 1758
Query 1680 TTTTTGCTGCAGTTGATGACGAACCTGTTTGATGCGCTGAAGTTTCCAGAATCAGAGGAG 1739
|||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 1759 TTTTTGCTGCAGTTGATGACAAACCTGTTTGATGCGCTGAAATTCCCAGAATCAGAGGAG 1818
Query 1740 AATCAATATCTGATGAAGTGTATAATGCGGGTCCTTGGTGTTGCTGATATCAGTGGTGAG 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1819 AATCAATATCTGATGAAGTGTATAATGCGGGTCCTTGGTGTTGCTGATATCAGTGCTGAG 1878
Query 1800 GTTGCTGGACCTTGCATCGGGGGATTGACCTCTATTCTCAGTGAAGTTTGCAAAAATCCT 1859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1879 GTTGCTGGACCTTGCATCGGGGGATTGACCTCTATTCTCAGTGAAGTTTGCAAAAATCCT 1938
Query 1860 AAAAATCCTATATTTAACCACTATCTCTTTGAGTCTGTGGCTGTACTTGTTCGACGAGCA 1919
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1939 AAAAATCCTATATTTAACCACTATCTCTTTGAGTCTGTGGCTGTACTTGTTCGACGGGCA 1998
Query 1920 TGTGAACGCGATATTTCTCTTACATCTGCATTTGAAACGAGTCTTTTCCCAAGCCTCCAG 1979
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1999 TGTGAACGTGATATTTCTCTTATATCTGCATTTGAAACGAGTCTTTTCCCAAGCCTCCAG 2058
Query 1980 TTGATTTTGGCCAATGATATCACAGAGTTCTTGCCTTATGCGTTTCAGTTGCTGGCTCAG 2039
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2059 ATGATTTTGGCGAATGATATCACAGAGTTCTTGCCTTATGGGTTTCAGTTGCTGGCTCAG 2118
Query 2040 CTTGTTGAGTTAAATAGACCGCCTCTCTCACCAAACTACATGCAGATCTTCTTGCTGCTC 2099
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2119 CTTGTTGAGTTAAATAGACCAACTCTCTCACCAAACTACATGCAGATCTTCTTGCTGCTC 2178
Query 2100 CTCTCGCCTGAGTCATGGAAGAGGAA-TGGCAATGTTCCAGCTCTTGTGCGTCTGCTTCA 2158
||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||
Sbjct 2179 CTCTCGCCTGAGTCATGGAAGAG-AAGTGGCAATGTTCCAGCTCTTGTGCGCCTGCTTCA 2237
Query 2159 AGCTTTTCTGCAGAAAGCACCTCATGAGGTTACTCAAGAGAATCGGTTGAGTCAAGTTCT 2218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2238 AGCTTTTCTGCAGAAAGCACCTCATGAGGTTACTCAAGAGAATCGGTTGAGTCAAGTTCT 2297
Query 2219 GGGGATATTTGAAAAGCTGGTTGCATCTCCTAGCACAGATGAGCAAGGCTTTTATATCCT 2278
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2298 GGGGATATTTGAAAAGCTGGTTGCATCTCCTAGCACGGATGAGCAAGGCTTTTATATCCT 2357
Query 2279 TAACACGATTATTGAGAATCTGGACTACAGTGTGATTGCACCTTACATGAAGGGTGTATG 2338
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2358 TAACACGATTATTGAGAATCTGGACTACAGTGTGATTGCACCTTACATGAAAGGTGTATG 2417
Query 2339 GAGTGCTCTATTCACACGCCTTCATAACAAAAAGACAGTCAAGTTCCAGAAGTCGCTAGT 2398
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 2418 GAGTGCTCTATTCACACGCGTTCAAAACAAAAAGACAGTCAAGTTCCAGAAGTCGCTAGT 2477
Query 2399 AATATTCATGTCGCTTTTCTTGGTGAAGCATGGACAGGCTTATCTAGTGGAGACTATGAA 2458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2478 AATATTCATGTCGCTTTTCTTGGTGAAGCATGGACAGGCTTATCTAGTGGAGACTATGAA 2537
Query 2459 TACTGTTCAGCCAAACATCTTCACTGCTATCTTGGAGCATTTCTGGATTCCGAACTTGAA 2518
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 2538 TACTGTTCAGCCAAACATCATCACTGCTATCGTGGAGCATTTCTGGATTCCGAACCTGAA 2597
Query 2519 ACTGATCATGGGGAGTATCGAGGTAAAGTTAACGGCAGTTGCTGCAACTAGACTCATATG 2578
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 2598 ACTGATCATGGGGAGTATGGAGGTCAAGTTAACGGCAGTTGCTGCAACTAGACTCATATG 2657
Query 2579 TGAGACTCCGGCTCTCCTGGATCCATCAGCTGCTAAACTCTGGGGGAAGATGCTTGATAG 2638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2658 TGAGACTCCGGCTCTCCTGGATCCATCAGCTGCTAAACTCTGGGGGAAGATGCTTGATAG 2717
Query 2639 CATAGTGACACTTGTTTCCAGGCCTGAGCAAGAAAGGGTACTAGATGAACCTGAAATGCC 2698
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2718 CATAGTGACGCTTGTTTCCAGGCCTGAGCAAGAAAGGGTACTTGATGAACCTGAAATGCC 2777
Query 2699 AGAAATCTCGGAGAATGTTGGATACACAGCTGCGTTTGTGAACCTTCACAATGCAGGGAA 2758
||||||||| ||||||||||||||||||||||| |||||||| || |||||||| |||||
Sbjct 2778 AGAAATCTCAGAGAATGTTGGATACACAGCTGCATTTGTGAAACTCCACAATGCTGGGAA 2837
Query 2759 AAAAGAAGAGGATCCTCTGAAAGACATCAAGGACCCGAAACAGTTCTTGGTCGCTTCTGT 2818
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2838 AAAAGAAGAGGATCCTCTGAAAGACATCAAGGACCCAAAACAGTTCTTGGTCGCTTCTGT 2897
Query 2819 TTCGAGGCTTTCTTCTGCTTCTCCTGGTAGGTACCCGCAGATAATTGGTGAGAATCTCGA 2878
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 2898 TTCGAGGCTTTCTTCTGCTTCTCCTGGTAGGTACCCACAGATAATTGGTGAGAATCTTGA 2957
Query 2879 ACAAGCTAACCAAGCAGCTTTGCTCCAGCTCTGCAATGCTTACAACTGTGGAATTGCTTG 2938
|||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2958 ACAAGCAAACCAAACAGCTTTGATCCAGCTCTGCAATGCTTACAACTGTGGAATTGCTTG 3017
Query 2939 AAGG 2942
||||
Sbjct 3018 AAGG 3021
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 147239977705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5