BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg935633 Length=1844 Score E Sequences producing significant alignments: (Bits) Value AT2G46530.3 | Symbols: ARF11 | auxin response factor 11 | chr2:... 2808 0.0 AT3G61830.1 | Symbols: ARF18 | auxin response factor 18 | chr3:... 1083 0.0 > AT2G46530.3 | Symbols: ARF11 | auxin response factor 11 | chr2:19105112-19108331 FORWARD LENGTH=2171 Length=2171 Score = 2808 bits (1520), Expect = 0.0 Identities = 1703/1793 (95%), Gaps = 5/1793 (0%) Strand=Plus/Plus Query 56 GGTCTAATGATGATCAATTGTACTCGGAGCTATGGAAAGCTTGTGCAGGGCCACTTGTGG 115 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 98 GGTCTAATGATGATGAATTGTACACGGAGCTATGGAAAGCTTGTGCAGGGCCACTTGTGG 157 Query 116 AAGTTCCTCGTTCTGGTGAAAGAGTTTTTTACTTCCCTCAAGGTCACATGGAACAATTGG 175 |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 158 AAGTTCCTCGTTATGGTGAAAGAGTTTTCTACTTCCCTCAAGGTCACATGGAACAATTGG 217 Query 176 TGGCTTCTACTAATCAAGGAGTTGTTGATCAAGAAATACCAGTGTTTAATCTTCCTCCAA 235 | ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 218 TTGCTTCGACTAATCAAGGAGTTGTTGATCAAGAGATACCAGTGTTTAATCTTCCTCCAA 277 Query 236 AGATACTTTGTCGAGTTCTTAGTGTT-CTGTTAAAAGCAGAGCATGAGACAGACGAGGTT 294 ||||||||||||| |||||||||||| | |||||||||||| |||||||| || |||||| Sbjct 278 AGATACTTTGTCGTGTTCTTAGTGTTAC-GTTAAAAGCAGAACATGAGACCGATGAGGTT 336 Query 295 TATGCTCAGATTACATTACAACCAGAAGAAGATCAAAGTGAACCCACAAGTCTTGATCCA 354 || |||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 337 TACGCTCAGATCACATTACAACCAGAAGAAGATCAAAGTGAACCAACAAGTCTTGACCCA 396 Query 355 CCTTTGGTCGAACCAGCTAAACCAACGGTTGATTCGTTTGTGAAGATTCTAACAGCTTCT 414 ||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 397 CCTTTAGTAGAACCAGCTAAACCAACGGTTGATTCTTTTGTGAAGATTCTAACAGCTTCA 456 Query 415 GATACAAGCACTCATGGTGGATTCTCTGTTCTTCGTAAACACGCCACTGAGTGTTTACCT 474 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 457 GATACAAGCACACATGGTGGATTCTCTGTTCTTCGTAAACACGCCACTGAGTGTTTACCT 516 Query 475 TCACTTGATATGACACAACCTACACCGACTCAAGAACTTGTAGCTAGAGATCTTCATGGC 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 517 TCACTTGATATGACACAACCTACACCGACTCAAGAACTTGTAGCTAGAGATCTTCACGGC 576 Query 535 TATGAATGGAGGTTTAAGCATATATTTAGAGGGCAACCAAGGAGGCATTTACTTACAACG 594 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 577 TATGAATGGAGGTTTAAGCATATATTTAGAGGGCAACCGAGGAGGCATTTACTTACAACC 636 Query 595 GGTTGGAGTACATTTGTAACCTCGAAAAGACTTGTAGCTGGAGATGCATTTGTGTTCTTG 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 637 GGTTGGAGTACATTTGTAACCTCGAAAAGACTTGTAGCTGGAGATGCATTTGTGTTCTTG 696 Query 655 AGGGGTGAAACCGGGGATTTACGAGTTGGTGTGAGACGTTTAGCTAAGCAGCAAAGCACG 714 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 697 AGGGGTGAAACCGGGGATTTACGGGTTGGTGTGAGGCGTTTAGCTAAGCAGCAAAGCACG 756 Query 715 ATGCCCGTATCAGTTATTTCGAGTCAGAGTATGCGTCTGGGAGTTCTTGCTACAGCTTCT 774 ||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 757 ATGCCCGCATCCGTTATTTCGAGTCAGAGTATGCGTTTGGGAGTTCTTGCTACAGCTTCT 816 Query 775 CATGCTGTTACCACAACAACTATATTTGTTGTCTTCTATAAACCAAGGATAAGCCAATTT 834 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 817 CATGCTGTTACCACAACAACTATATTTGTTGTCTTCTATAAACCAAGGATAAGCCAGTTT 876 Query 835 ATAATCAGTGTGAACAAGTATATGGTGGCGATGAAGAACGGGTTTTCTCTCGGTATGCGG 894 ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 877 ATAATTAGTGTGAACAAGTATATGATGGCGATGAAGAACGGGTTTTCTCTCGGTATGCGG 936 Query 895 TTTAGGATGAGATTCGAAGGAGAAGAGTCTCCTGAGAGAATATTTACAGGTACGATTGTT 954 | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 937 TATAGGATGAGATTCGAAGGAGAAGAGTCTCCTGAGAGAATATTTACAGGTACCATTATT 996 Query 955 GGTAGTGGAGATCTATCTTCTCAATGGCCAGCTTCCAAATGGAGGTCATTGCAGATCCAA 1014 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 997 GGCAGTGGAGATCTATCTTCTCAATGGCCAGCTTCCAAATGGAGGTCATTGCAGATCCAA 1056 Query 1015 TGGGACGAGCCATCTTCTATTCCGAGACCAAACAAGGTCTCACCGTGGGAGATTGAGCCT 1074 |||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||| Sbjct 1057 TGGGACGAGCCATCTTCTATACAGAGACCAAACAAGGTCTCACCGTGGGAGATCGAGCCT 1116 Query 1075 TTCTCACCATCTGCGCTTACCCCGACGCCTACTCAACAACAATCAAAGTCCAAACGGTCC 1134 ||||||||||| |||||||| || || ||||||||||||||||||||||||||||||||| Sbjct 1117 TTCTCACCATCCGCGCTTACACCAACCCCTACTCAACAACAATCAAAGTCCAAACGGTCC 1176 Query 1135 AGACCCAT-T--GAAATCACAGGGAGTCCCGCAGCTTCTAATTTCTTGAGTAGCTTCCCG 1191 ||||| || | ||||||||||||||||| | |||||||| |||||||||||| ||| || Sbjct 1177 AGACCAATCTCAGAAATCACAGGGAGTCCTGTAGCTTCTAGTTTCTTGAGTAGTTTCTCG 1236 Query 1192 CAGAGCCACGAGTCTAATCCATCAGTCAAATTGTTGTTTCACGATACAGCAACTGAGAGA 1251 ||||||||||||||||||||||| |||||| |||||||||| ||| ||||||| |||||| Sbjct 1237 CAGAGCCACGAGTCTAATCCATCGGTCAAACTGTTGTTTCAAGATCCAGCAACCGAGAGA 1296 Query 1252 AACTCAAACAAATCAGTGTTTTCAAGTGGATTACAATGCAAGAAAACCGAGGCTCCGGTC 1311 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1297 AACTCAAACAAATCAGTGTTTTCAAGTGGATTACAATGCAAGATAACCGAGGCTCCGGTC 1356 Query 1312 ACAAGTTGTTGTAGGTTATTCGGATTCGACCTCACGAGCAAGCCTGCTTCTGCTCCAATT 1371 |||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 1357 ACAAGTAGTTGTAGGTTATTCGGATTCGATCTCACGAGCAAGCCTGCTTCTGCTACAATT 1416 Query 1372 CCTTGTAACAAGCAACTAATAAGTGTGGATTCAAATATCTCTGATTCTACCCCCAAGTGT 1431 ||| | ||||||| ||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 1417 CCTCATGACAAGCAGCTAATAAGTGTGGATTCAAATATATCTGATTCTACCACCAAGTGT 1476 Query 1432 CAAGATCCTAACTCCTCGAACTCACCAAAAGAGCAGAAACAACAAACATCCACAAGAAGC 1491 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 1477 CAAGATCCTAACTCTTCAAACTCACCAAAAGAGCAGAAACAACAAACATCCACAAGAAGC 1536 Query 1492 CGAATTAAGGTGCAAATGCAAGGAACAGCGGTAGGGCGCGCGGTTGATTTAACATTGTTG 1551 ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 1537 CGAATCAAGGTGCAAATGCAAGGAACAGCGGTTGGACGCGCGGTTGATTTAACATTGTTG 1596 Query 1552 AGATCATACGATGAGTTAATCAAAGAGCTAGAGAAAATGTTTGAGATTGAAGGAGAGCTT 1611 |||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 1597 AGATCATACGATGAACTAATAAAAGAGCTAGAGAAAATGTTTGAGATTGAAGGAGAACTT 1656 Query 1612 AGTCCTAAAGACAAATGGGCTATCGTGTTTACAGACGATGAAGGAGATATGATGCTTGTA 1671 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1657 AGTCCTAAAGACAAATGGGCTATCGTGTTTACAGACGATGAAGGAGATAGGATGCTTGTA 1716 Query 1672 GGAGACGATCCATGGAATGAGTTCTGTAAAATGGCAAAGAAGTTATTCATATATCCGAGT 1731 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1717 GGAGATGATCCATGGAATGAGTTCTGTAAAATGGCAAAGAAGTTATTCATATATCCGAGT 1776 Query 1732 GATGAGGTCAAGAAATTGAGCTCGAAGTCGTTGTTGCGTGATGAAGGTACAATCGTATAT 1791 ||||||||||||||| |||| ||||||||||||||| ||||| ||||||| |||||| || Sbjct 1777 GATGAGGTCAAGAAAATGAGGTCGAAGTCGTTGTTGGGTGATAAAGGTACGATCGTAAAT 1836 Query 1792 CTTAAATCGGATCAGAGGACAATTCACGTTTAACTACCAAGTTCTTGATTTCT 1844 ||| |||| |||||||||||| |||||||||||||| |||||| ||||||||| Sbjct 1837 CTTGAATCAGATCAGAGGACAGTTCACGTTTAACTATCAAGTTGTTGATTTCT 1889 > AT3G61830.1 | Symbols: ARF18 | auxin response factor 18 | chr3:22887889-22891435 FORWARD LENGTH=2347 Length=2347 Score = 1083 bits (586), Expect = 0.0 Identities = 895/1042 (86%), Gaps = 30/1042 (3%) Strand=Plus/Plus Query 52 TCACGGTCTAATGATGATCAATTGTACTCGGAGCTATGGAAAGCTTGTGCAGGGCCACTT 111 ||| ||||| || | |||||| | ||| | ||||||||||||| ||||||||| ||| || Sbjct 325 TCAAGGTCTTATCAAGATCAACTATACACAGAGCTATGGAAAGTTTGTGCAGGTCCA-TT 383 Query 112 -GTGGAAGTTCCTCGTTCTGGTGAAAGAGTTTTTTACTTCCCTCAAGGTCACATGGAACA 170 ||||||||||||||| || || |||||||| ||||||||||| |||||||||||||| Sbjct 384 AGTGGAAGTTCCTCGTGCTCAAGAGAGAGTTTTCTACTTCCCTCAGGGTCACATGGAACA 443 Query 171 A-TTGGTGGCTTCTACTAATCAAGGAGT-TGTTGATCAAGAAATACCAGTGTTTAATCTT 228 | || ||||| || |||||||||||| | || | |||||||||| || ||| ||||| Sbjct 444 ACTT-GTGGCGTCAACTAATCAAGGAATCAATTCA-GAAGAAATACCTGTTTTTGATCTT 501 Query 229 CCTCCAAAGATACTTTGTCGAGTTCTTAG-TGT-TCTGTTAAAAGCAGAGCATGAGACAG 286 ||||||||||||||||||||||||||| | ||| || ||||| || |||||||| |||| Sbjct 502 CCTCCAAAGATACTTTGTCGAGTTCTT-GATGTCACT-TTAAAGGCGGAGCATGAAACAG 559 Query 287 ACGAGGTTTATGCTCAGATTACATTACAACCAGAAGAAGATCAAAGTGAACCCACAAGTC 346 | |||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||| Sbjct 560 ATGAGGTTTACGCTCAGATCACATTACAACCAGAGGAAGATCAAAGTGAACCAACAAGTC 619 Query 347 TTGATCCACCT-TTGGTCGAACCAGCTAAACCAACG-G-TTGATTCGTTTGTGAAGATTC 403 ||||||||||| || || | |||| || || ||| | | || |||||||||| |||||| Sbjct 620 TTGATCCACCTATT-GTTGGACCAACT-AAGCAA-GAGTTTCATTCGTTTGTTAAGATTT 676 Query 404 TAACAGCTTCTGATACAAGCACTCATGGTGGATTCTCTGTTCTTCGTAAACACGCCACTG 463 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 677 TAACGGCTTCAGATACAAGCACTCATGGTGGATTCTCTGTTCTTCGTAAACACGCCACTG 736 Query 464 AGTGTTTACCTTCACTTG-ATATGACACAACCTACACCGACTCAAGAACTTGT-AGCTAG 521 | || || ||||| ||| ||||||||||| |||| || |||||||||||||| | |||| Sbjct 737 AATGCTTGCCTTCT-TTGGATATGACACAAGCTACTCCTACTCAAGAACTTGTGA-CTAG 794 Query 522 AGATCTTCATGGCTATGAATGGAGGTTTAAGCATATATTTAGAGGGCAACCAAGGAGGCA 581 |||||||||||||| |||||||||||||||||||||||| ||||| |||||| ||||||| Sbjct 795 AGATCTTCATGGCTTTGAATGGAGGTTTAAGCATATATTCAGAGGACAACCACGGAGGCA 854 Query 582 TTTACTTACAACGGGTTGGAGTACATTTGTAACCTCGAAAAGACTTGTAGCTGGAGATGC 641 ||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 855 TTTGCTTACTACGGGTTGGAGTACATTTGTATCCTCGAAAAGACTTGTAGCTGGAGATGC 914 Query 642 ATTTGTGTTCTTGAGGGGTGA-AACCGGGGATTTACGAGTTGGTGTGAGACGTTTAGCTA 700 |||||||||||||||||||| || ||||||||||| ||||| |||||||| |||||| Sbjct 915 TTTTGTGTTCTTGAGGGGTGAGAAT-GGGGATTTACGGGTTGGAGTGAGACGATTAGCTC 973 Query 701 AGCAGCAAAGCACGATGCCCGTA-T-CAGTTATTTCGAGTCAGAGTATGCGTCTGGGAGT 758 ||| |||||||| ||||| || | | |||||||| |||||||| |||| | ||||||| Sbjct 974 GGCATCAAAGCACAATGCC--TACTTCGGTTATTTCAAGTCAGAGCATGCATTTGGGAGT 1031 Query 759 TCTTGCTACAGCTTCTCATGCTGTTACC-ACAACAACTATATTTGTTGTCTTCTATAAAC 817 |||||||||||||||||||||||| | |||||||| || ||||||||||| || || | Sbjct 1032 TCTTGCTACAGCTTCTCATGCTGTG-CGTACAACAACAATCTTTGTTGTCTTTTACAAGC 1090 Query 818 CAAGGATAAGCCAATTTATAATCAGTGTGAACAAGTATATGGTGGCGATGAAGAACGGGT 877 | |||||||||||||| ||| | | |||||||||||||||| || || ||| | || | Sbjct 1091 CTAGGATAAGCCAATTCATAGTTGGGGTGAACAAGTATATGGAAGCTATAAAGCATGGAT 1150 Query 878 TTTCTCTCGGTATGCGGTTTAGGATGAGATTCGAAGGAGAAGAGTCTCCTGAGAGAATAT 937 |||||||||||| || || || ||||| || |||||||||||||||||||||||||||| Sbjct 1151 TTTCTCTCGGTACCCGATTCAGAATGAGGTTTGAAGGAGAAGAGTCTCCTGAGAGAATAT 1210 Query 938 TTACAGGTACGATTGTTGGTAGTGGAGATCTATCTTCTCAATGGCCAGCTTCCAAATGGA 997 |||| ||||||||||| || ||||||||||||||||| |||||||||||||| ||||||| Sbjct 1211 TTACTGGTACGATTGTGGGAAGTGGAGATCTATCTTCACAATGGCCAGCTTCTAAATGGA 1270 Query 998 GGTCATTGCAGATCCAATGGGACGAGCCATCTTCTA-TTCCGAGACCAAACAAGGTCTCA 1056 ||||||||||| | |||||||| |||||| | | | ||| ||||||| | || |||||| Sbjct 1271 GGTCATTGCAGGTACAATGGGATGAGCCAACAAC-AGTTCAGAGACCAGATAAAGTCTCA 1329 Query 1057 CCGTGGGAGATTGAGCCTTTCT 1078 || |||||||| |||||||||| Sbjct 1330 CCATGGGAGATAGAGCCTTTCT 1351 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 91264590810 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5