BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935633
Length=1844
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46530.3 | Symbols: ARF11 | auxin response factor 11 | chr2:... 2808 0.0
AT3G61830.1 | Symbols: ARF18 | auxin response factor 18 | chr3:... 1083 0.0
> AT2G46530.3 | Symbols: ARF11 | auxin response factor 11 | chr2:19105112-19108331
FORWARD LENGTH=2171
Length=2171
Score = 2808 bits (1520), Expect = 0.0
Identities = 1703/1793 (95%), Gaps = 5/1793 (0%)
Strand=Plus/Plus
Query 56 GGTCTAATGATGATCAATTGTACTCGGAGCTATGGAAAGCTTGTGCAGGGCCACTTGTGG 115
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 98 GGTCTAATGATGATGAATTGTACACGGAGCTATGGAAAGCTTGTGCAGGGCCACTTGTGG 157
Query 116 AAGTTCCTCGTTCTGGTGAAAGAGTTTTTTACTTCCCTCAAGGTCACATGGAACAATTGG 175
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 158 AAGTTCCTCGTTATGGTGAAAGAGTTTTCTACTTCCCTCAAGGTCACATGGAACAATTGG 217
Query 176 TGGCTTCTACTAATCAAGGAGTTGTTGATCAAGAAATACCAGTGTTTAATCTTCCTCCAA 235
| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 218 TTGCTTCGACTAATCAAGGAGTTGTTGATCAAGAGATACCAGTGTTTAATCTTCCTCCAA 277
Query 236 AGATACTTTGTCGAGTTCTTAGTGTT-CTGTTAAAAGCAGAGCATGAGACAGACGAGGTT 294
||||||||||||| |||||||||||| | |||||||||||| |||||||| || ||||||
Sbjct 278 AGATACTTTGTCGTGTTCTTAGTGTTAC-GTTAAAAGCAGAACATGAGACCGATGAGGTT 336
Query 295 TATGCTCAGATTACATTACAACCAGAAGAAGATCAAAGTGAACCCACAAGTCTTGATCCA 354
|| |||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 337 TACGCTCAGATCACATTACAACCAGAAGAAGATCAAAGTGAACCAACAAGTCTTGACCCA 396
Query 355 CCTTTGGTCGAACCAGCTAAACCAACGGTTGATTCGTTTGTGAAGATTCTAACAGCTTCT 414
||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 397 CCTTTAGTAGAACCAGCTAAACCAACGGTTGATTCTTTTGTGAAGATTCTAACAGCTTCA 456
Query 415 GATACAAGCACTCATGGTGGATTCTCTGTTCTTCGTAAACACGCCACTGAGTGTTTACCT 474
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 GATACAAGCACACATGGTGGATTCTCTGTTCTTCGTAAACACGCCACTGAGTGTTTACCT 516
Query 475 TCACTTGATATGACACAACCTACACCGACTCAAGAACTTGTAGCTAGAGATCTTCATGGC 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 517 TCACTTGATATGACACAACCTACACCGACTCAAGAACTTGTAGCTAGAGATCTTCACGGC 576
Query 535 TATGAATGGAGGTTTAAGCATATATTTAGAGGGCAACCAAGGAGGCATTTACTTACAACG 594
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 577 TATGAATGGAGGTTTAAGCATATATTTAGAGGGCAACCGAGGAGGCATTTACTTACAACC 636
Query 595 GGTTGGAGTACATTTGTAACCTCGAAAAGACTTGTAGCTGGAGATGCATTTGTGTTCTTG 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 GGTTGGAGTACATTTGTAACCTCGAAAAGACTTGTAGCTGGAGATGCATTTGTGTTCTTG 696
Query 655 AGGGGTGAAACCGGGGATTTACGAGTTGGTGTGAGACGTTTAGCTAAGCAGCAAAGCACG 714
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 697 AGGGGTGAAACCGGGGATTTACGGGTTGGTGTGAGGCGTTTAGCTAAGCAGCAAAGCACG 756
Query 715 ATGCCCGTATCAGTTATTTCGAGTCAGAGTATGCGTCTGGGAGTTCTTGCTACAGCTTCT 774
||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 757 ATGCCCGCATCCGTTATTTCGAGTCAGAGTATGCGTTTGGGAGTTCTTGCTACAGCTTCT 816
Query 775 CATGCTGTTACCACAACAACTATATTTGTTGTCTTCTATAAACCAAGGATAAGCCAATTT 834
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 817 CATGCTGTTACCACAACAACTATATTTGTTGTCTTCTATAAACCAAGGATAAGCCAGTTT 876
Query 835 ATAATCAGTGTGAACAAGTATATGGTGGCGATGAAGAACGGGTTTTCTCTCGGTATGCGG 894
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 877 ATAATTAGTGTGAACAAGTATATGATGGCGATGAAGAACGGGTTTTCTCTCGGTATGCGG 936
Query 895 TTTAGGATGAGATTCGAAGGAGAAGAGTCTCCTGAGAGAATATTTACAGGTACGATTGTT 954
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 937 TATAGGATGAGATTCGAAGGAGAAGAGTCTCCTGAGAGAATATTTACAGGTACCATTATT 996
Query 955 GGTAGTGGAGATCTATCTTCTCAATGGCCAGCTTCCAAATGGAGGTCATTGCAGATCCAA 1014
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 GGCAGTGGAGATCTATCTTCTCAATGGCCAGCTTCCAAATGGAGGTCATTGCAGATCCAA 1056
Query 1015 TGGGACGAGCCATCTTCTATTCCGAGACCAAACAAGGTCTCACCGTGGGAGATTGAGCCT 1074
|||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct 1057 TGGGACGAGCCATCTTCTATACAGAGACCAAACAAGGTCTCACCGTGGGAGATCGAGCCT 1116
Query 1075 TTCTCACCATCTGCGCTTACCCCGACGCCTACTCAACAACAATCAAAGTCCAAACGGTCC 1134
||||||||||| |||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 1117 TTCTCACCATCCGCGCTTACACCAACCCCTACTCAACAACAATCAAAGTCCAAACGGTCC 1176
Query 1135 AGACCCAT-T--GAAATCACAGGGAGTCCCGCAGCTTCTAATTTCTTGAGTAGCTTCCCG 1191
||||| || | ||||||||||||||||| | |||||||| |||||||||||| ||| ||
Sbjct 1177 AGACCAATCTCAGAAATCACAGGGAGTCCTGTAGCTTCTAGTTTCTTGAGTAGTTTCTCG 1236
Query 1192 CAGAGCCACGAGTCTAATCCATCAGTCAAATTGTTGTTTCACGATACAGCAACTGAGAGA 1251
||||||||||||||||||||||| |||||| |||||||||| ||| ||||||| ||||||
Sbjct 1237 CAGAGCCACGAGTCTAATCCATCGGTCAAACTGTTGTTTCAAGATCCAGCAACCGAGAGA 1296
Query 1252 AACTCAAACAAATCAGTGTTTTCAAGTGGATTACAATGCAAGAAAACCGAGGCTCCGGTC 1311
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1297 AACTCAAACAAATCAGTGTTTTCAAGTGGATTACAATGCAAGATAACCGAGGCTCCGGTC 1356
Query 1312 ACAAGTTGTTGTAGGTTATTCGGATTCGACCTCACGAGCAAGCCTGCTTCTGCTCCAATT 1371
|||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1357 ACAAGTAGTTGTAGGTTATTCGGATTCGATCTCACGAGCAAGCCTGCTTCTGCTACAATT 1416
Query 1372 CCTTGTAACAAGCAACTAATAAGTGTGGATTCAAATATCTCTGATTCTACCCCCAAGTGT 1431
||| | ||||||| ||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1417 CCTCATGACAAGCAGCTAATAAGTGTGGATTCAAATATATCTGATTCTACCACCAAGTGT 1476
Query 1432 CAAGATCCTAACTCCTCGAACTCACCAAAAGAGCAGAAACAACAAACATCCACAAGAAGC 1491
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 CAAGATCCTAACTCTTCAAACTCACCAAAAGAGCAGAAACAACAAACATCCACAAGAAGC 1536
Query 1492 CGAATTAAGGTGCAAATGCAAGGAACAGCGGTAGGGCGCGCGGTTGATTTAACATTGTTG 1551
||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1537 CGAATCAAGGTGCAAATGCAAGGAACAGCGGTTGGACGCGCGGTTGATTTAACATTGTTG 1596
Query 1552 AGATCATACGATGAGTTAATCAAAGAGCTAGAGAAAATGTTTGAGATTGAAGGAGAGCTT 1611
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1597 AGATCATACGATGAACTAATAAAAGAGCTAGAGAAAATGTTTGAGATTGAAGGAGAACTT 1656
Query 1612 AGTCCTAAAGACAAATGGGCTATCGTGTTTACAGACGATGAAGGAGATATGATGCTTGTA 1671
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1657 AGTCCTAAAGACAAATGGGCTATCGTGTTTACAGACGATGAAGGAGATAGGATGCTTGTA 1716
Query 1672 GGAGACGATCCATGGAATGAGTTCTGTAAAATGGCAAAGAAGTTATTCATATATCCGAGT 1731
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1717 GGAGATGATCCATGGAATGAGTTCTGTAAAATGGCAAAGAAGTTATTCATATATCCGAGT 1776
Query 1732 GATGAGGTCAAGAAATTGAGCTCGAAGTCGTTGTTGCGTGATGAAGGTACAATCGTATAT 1791
||||||||||||||| |||| ||||||||||||||| ||||| ||||||| |||||| ||
Sbjct 1777 GATGAGGTCAAGAAAATGAGGTCGAAGTCGTTGTTGGGTGATAAAGGTACGATCGTAAAT 1836
Query 1792 CTTAAATCGGATCAGAGGACAATTCACGTTTAACTACCAAGTTCTTGATTTCT 1844
||| |||| |||||||||||| |||||||||||||| |||||| |||||||||
Sbjct 1837 CTTGAATCAGATCAGAGGACAGTTCACGTTTAACTATCAAGTTGTTGATTTCT 1889
> AT3G61830.1 | Symbols: ARF18 | auxin response factor 18 | chr3:22887889-22891435
FORWARD LENGTH=2347
Length=2347
Score = 1083 bits (586), Expect = 0.0
Identities = 895/1042 (86%), Gaps = 30/1042 (3%)
Strand=Plus/Plus
Query 52 TCACGGTCTAATGATGATCAATTGTACTCGGAGCTATGGAAAGCTTGTGCAGGGCCACTT 111
||| ||||| || | |||||| | ||| | ||||||||||||| ||||||||| ||| ||
Sbjct 325 TCAAGGTCTTATCAAGATCAACTATACACAGAGCTATGGAAAGTTTGTGCAGGTCCA-TT 383
Query 112 -GTGGAAGTTCCTCGTTCTGGTGAAAGAGTTTTTTACTTCCCTCAAGGTCACATGGAACA 170
||||||||||||||| || || |||||||| ||||||||||| ||||||||||||||
Sbjct 384 AGTGGAAGTTCCTCGTGCTCAAGAGAGAGTTTTCTACTTCCCTCAGGGTCACATGGAACA 443
Query 171 A-TTGGTGGCTTCTACTAATCAAGGAGT-TGTTGATCAAGAAATACCAGTGTTTAATCTT 228
| || ||||| || |||||||||||| | || | |||||||||| || ||| |||||
Sbjct 444 ACTT-GTGGCGTCAACTAATCAAGGAATCAATTCA-GAAGAAATACCTGTTTTTGATCTT 501
Query 229 CCTCCAAAGATACTTTGTCGAGTTCTTAG-TGT-TCTGTTAAAAGCAGAGCATGAGACAG 286
||||||||||||||||||||||||||| | ||| || ||||| || |||||||| ||||
Sbjct 502 CCTCCAAAGATACTTTGTCGAGTTCTT-GATGTCACT-TTAAAGGCGGAGCATGAAACAG 559
Query 287 ACGAGGTTTATGCTCAGATTACATTACAACCAGAAGAAGATCAAAGTGAACCCACAAGTC 346
| |||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 560 ATGAGGTTTACGCTCAGATCACATTACAACCAGAGGAAGATCAAAGTGAACCAACAAGTC 619
Query 347 TTGATCCACCT-TTGGTCGAACCAGCTAAACCAACG-G-TTGATTCGTTTGTGAAGATTC 403
||||||||||| || || | |||| || || ||| | | || |||||||||| ||||||
Sbjct 620 TTGATCCACCTATT-GTTGGACCAACT-AAGCAA-GAGTTTCATTCGTTTGTTAAGATTT 676
Query 404 TAACAGCTTCTGATACAAGCACTCATGGTGGATTCTCTGTTCTTCGTAAACACGCCACTG 463
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 TAACGGCTTCAGATACAAGCACTCATGGTGGATTCTCTGTTCTTCGTAAACACGCCACTG 736
Query 464 AGTGTTTACCTTCACTTG-ATATGACACAACCTACACCGACTCAAGAACTTGT-AGCTAG 521
| || || ||||| ||| ||||||||||| |||| || |||||||||||||| | ||||
Sbjct 737 AATGCTTGCCTTCT-TTGGATATGACACAAGCTACTCCTACTCAAGAACTTGTGA-CTAG 794
Query 522 AGATCTTCATGGCTATGAATGGAGGTTTAAGCATATATTTAGAGGGCAACCAAGGAGGCA 581
|||||||||||||| |||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct 795 AGATCTTCATGGCTTTGAATGGAGGTTTAAGCATATATTCAGAGGACAACCACGGAGGCA 854
Query 582 TTTACTTACAACGGGTTGGAGTACATTTGTAACCTCGAAAAGACTTGTAGCTGGAGATGC 641
||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 855 TTTGCTTACTACGGGTTGGAGTACATTTGTATCCTCGAAAAGACTTGTAGCTGGAGATGC 914
Query 642 ATTTGTGTTCTTGAGGGGTGA-AACCGGGGATTTACGAGTTGGTGTGAGACGTTTAGCTA 700
|||||||||||||||||||| || ||||||||||| ||||| |||||||| ||||||
Sbjct 915 TTTTGTGTTCTTGAGGGGTGAGAAT-GGGGATTTACGGGTTGGAGTGAGACGATTAGCTC 973
Query 701 AGCAGCAAAGCACGATGCCCGTA-T-CAGTTATTTCGAGTCAGAGTATGCGTCTGGGAGT 758
||| |||||||| ||||| || | | |||||||| |||||||| |||| | |||||||
Sbjct 974 GGCATCAAAGCACAATGCC--TACTTCGGTTATTTCAAGTCAGAGCATGCATTTGGGAGT 1031
Query 759 TCTTGCTACAGCTTCTCATGCTGTTACC-ACAACAACTATATTTGTTGTCTTCTATAAAC 817
|||||||||||||||||||||||| | |||||||| || ||||||||||| || || |
Sbjct 1032 TCTTGCTACAGCTTCTCATGCTGTG-CGTACAACAACAATCTTTGTTGTCTTTTACAAGC 1090
Query 818 CAAGGATAAGCCAATTTATAATCAGTGTGAACAAGTATATGGTGGCGATGAAGAACGGGT 877
| |||||||||||||| ||| | | |||||||||||||||| || || ||| | || |
Sbjct 1091 CTAGGATAAGCCAATTCATAGTTGGGGTGAACAAGTATATGGAAGCTATAAAGCATGGAT 1150
Query 878 TTTCTCTCGGTATGCGGTTTAGGATGAGATTCGAAGGAGAAGAGTCTCCTGAGAGAATAT 937
|||||||||||| || || || ||||| || ||||||||||||||||||||||||||||
Sbjct 1151 TTTCTCTCGGTACCCGATTCAGAATGAGGTTTGAAGGAGAAGAGTCTCCTGAGAGAATAT 1210
Query 938 TTACAGGTACGATTGTTGGTAGTGGAGATCTATCTTCTCAATGGCCAGCTTCCAAATGGA 997
|||| ||||||||||| || ||||||||||||||||| |||||||||||||| |||||||
Sbjct 1211 TTACTGGTACGATTGTGGGAAGTGGAGATCTATCTTCACAATGGCCAGCTTCTAAATGGA 1270
Query 998 GGTCATTGCAGATCCAATGGGACGAGCCATCTTCTA-TTCCGAGACCAAACAAGGTCTCA 1056
||||||||||| | |||||||| |||||| | | | ||| ||||||| | || ||||||
Sbjct 1271 GGTCATTGCAGGTACAATGGGATGAGCCAACAAC-AGTTCAGAGACCAGATAAAGTCTCA 1329
Query 1057 CCGTGGGAGATTGAGCCTTTCT 1078
|| |||||||| ||||||||||
Sbjct 1330 CCATGGGAGATAGAGCCTTTCT 1351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91264590810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5