BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935641
Length=1153
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46590.2 | Symbols: DAG2 | Dof-type zinc finger DNA-binding ... 1801 0.0
AT3G61850.4 | Symbols: DAG1 | Dof-type zinc finger DNA-binding ... 296 3e-79
AT4G24060.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 209 4e-53
AT2G28510.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 134 2e-30
AT5G60200.1 | Symbols: TMO6 | TARGET OF MONOPTEROS 6 | chr5:242... 110 4e-23
> AT2G46590.2 | Symbols: DAG2 | Dof-type zinc finger DNA-binding
family protein | chr2:19133040-19134905 FORWARD LENGTH=1236
Length=1236
Score = 1801 bits (975), Expect = 0.0
Identities = 1090/1142 (95%), Gaps = 21/1142 (2%)
Strand=Plus/Plus
Query 1 CTTTCTCTTTGTCGGAAGTCATGGACGCTACGAAGTGGACACAGGGTTTTCAAGAACTGA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 107 CTTTCTCTTTGTCGGAAGTCATGGACGCTACGAAGTGGACACAGGGTTTTCAAGAAATGA 166
Query 61 TGAATGTAAAACCAATGGAGCAGATCATGATTCCTAATAACAATACACATCAATCAAACA 120
|||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 167 TGAACGTTAAACCAATGGAGCAGATCATGATTCCTAATAACAACACACATCAACCAAACA 226
Query 121 CCACATCCAATGCAAGGCCAAACACCATTCTCACATCTAACGGTGTCTCATCCGCTGGAG 180
||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct 227 CCACATCCAATGCAAGGCCAAACACCATTCTCACATCTAACGGCGTCTCAACTGCTGGAG 286
Query 181 CAACCGTCTCCGGCGTAAGCAACAACAATAACAATACGGCGGTTGTGGCGGAGAGGAAAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 CAACCGTCTCCGGCGTAAGCAACAACAATAACAATACGGCGGTTGTGGCGGAGAGGAAAG 346
Query 241 CAAGACCACAAGAGAAACTAAATTGTCCAAGATGTAACTCTACCAACACAAAGTTTTGTT 300
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 347 CAAGACCACAAGAGAAACTAAATTGTCCAAGATGCAACTCAACCAACACAAAGTTTTGTT 406
Query 301 ACTACAACAACTATAGTCTCACACAACCAAGATACTTCTGCAAAGGTTGTCGAAGGTATT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 ACTACAACAACTATAGTCTCACACAACCAAGATACTTCTGCAAAGGTTGTCGAAGGTATT 466
Query 361 GGACCGAAGGTGGATCTCTTAGGAATGTTCCTGTGGGAGGAAGCTCAAGAAAGAACAAGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 GGACCGAAGGTGGATCTCTTAGGAATGTTCCTGTGGGAGGAAGCTCAAGAAAGAACAAGA 526
Query 421 GATCATCTTCATCAAACATCCTTCAGACGACACCAT-CTTCACTTG-GTTTGACCA-CAA 477
|||||||||||| | | ||||| | | | ||| ||||| | | |||| |
Sbjct 527 GATCATCTTCAT----C-TTCTTCA-TC-A-AACATCCTTCA---GACAAT-ACCATCTT 574
Query 478 CACTTCCAGATCTAAACCCACCAATACTCTTCTCAAACCAAATCCATAATAAATCGAAAG 537
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 575 CACTTCCAGATCTAAACCCGCCAATACTCTTCTCAAACCAAATCCATAATAAATCGAAAG 634
Query 538 GGTCATCACAAGATCTCAACTTGTTGTCTTTCCCGGTCATGCAAGATCAACATCAACATC 597
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 635 GGTCATCACAAGATCTCAACTTGTTGTCTTTCCCAGTCATGCAAGATCAACATCATCATC 694
Query 598 ATGTCCATATGTCTCAGTTTCTTCAGATGCCGAAGATGGAGGGAAATGGTAACATAACTC 657
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 695 ATGTCCATATGTCTCAGTTTCTTCAGATGCCTAAGATGGAGGGAAATGGTAACATAACTC 754
Query 658 ATCAGCAGCAGCCTTCATCATCTTCTTCTCTCTATGGCTCCTCGTCGTCTCCTGTTTCAG 717
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 755 ATCAGCAGCAGCCTTCATCATCTTCTTCTGTCTATGGTTCCTCGTCGTCTCCTGTTTCAG 814
Query 718 CTCTTGAACTTTTAAGAACCGGAGTTAATGTTTCTGCGAGATCAGGGATTAACTCA---T 774
||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
Sbjct 815 CTCTTGAACTTTTAAGAACCGGAGTTAATGTTTCTTCAAGATCAGGGATTAACTCATCGT 874
Query 775 TCATGCCTTCCGGTTCAATGATGGATTCAAACACTGTGCTTTACACTTCTTCAGGGTTTC 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 TCATGCCTTCCGGTTCAATGATGGATTCAAACACTGTGCTTTACACTTCTTCAGGGTTTC 934
Query 835 CAACAATGGTGGATTACAAGCCAAGTAATCTCTCCTTCTCTACCGATCATCAAGGGCTTG 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 CAACAATGGTGGATTACAAGCCAAGTAATCTCTCCTTCTCTACCGATCATCAAGGGCTTG 994
Query 895 GACACAACAGCAACAATAGGTCTGAAGCTCTTCATAATGATCATCACCAACAAGGTAGAG 954
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 995 GACACAATAGCAACAATAGGTCTGAAGCTCTTCATAGTGATCATCACCAACAAGGTAGAG 1054
Query 955 TTTTGTTTCCATTTGGGGATCAAATGAAGGAGCTTTCATCAAGCATAACACAAGAAGTTG 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 TTTTGTTTCCATTTGGGGATCAAATGAAGGAGCTTTCATCAAGCATAACACAAGAAGTTG 1114
Query 1015 ATCATGATGATAATCAACAACAAAAGAGTCATGGAAATAATAATAATAACAA---CTCAA 1071
|||||||||||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 1115 ATCATGATGATAATCAACAACAGAAGAGTCATGGAAATAATAATAATAATAATAACTCAA 1174
Query 1072 GCCCTAATAATGGATATTGGACTGGGATGTTCAGTACTACAGGAGGAGGATCTTCATGGT 1131
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1175 GCCCTAATAATGGATATTGGAGTGGGATGTTCAGTACTACAGGAGGAGGATCTTCATGGT 1234
Query 1132 GA 1133
||
Sbjct 1235 GA 1236
> AT3G61850.4 | Symbols: DAG1 | Dof-type zinc finger DNA-binding
family protein | chr3:22895268-22897488 FORWARD LENGTH=1540
Length=1540
Score = 296 bits (160), Expect = 3e-79
Identities = 329/404 (81%), Gaps = 37/404 (9%)
Strand=Plus/Plus
Query 236 GAAA-GCAAGACCACAAGAGAAACTAAATTGTCCAAGATGTAACTCTACCAACACAAAGT 294
|||| || || |||||||||||| |||||||||||||||| ||||| || ||||||||||
Sbjct 424 GAAAGGCGAGGCCACAAGAGAAAGTAAATTGTCCAAGATGCAACTCAACAAACACAAAGT 483
Query 295 TTTGTTACTACAACAACTATAGTCTCACACAACCAAGATACTTCTGCAAAGGTTGTCGAA 354
| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 484 TCTGTTATTACAACAACTACAGTCTCACGCAACCAAGATACTTCTGCAAAGGTTGTCGAA 543
Query 355 GGTATTGGACCGAAGGTGGATCTCTTAGGAATGTTCCTGTGGGAGGAAGCTCAAGAAAGA 414
||||||||||||||||||| |||||| | || || || || ||||| |||||||||||||
Sbjct 544 GGTATTGGACCGAAGGTGGCTCTCTTCGTAACGTCCCAGTCGGAGGTAGCTCAAGAAAGA 603
Query 415 ACAAGAGATCATCTTCATCAAACATCCTTCAGACGACACCATCTTCACTTGGTTTGACCA 474
|||||||||| || | | | || |||| || | |||| ||| | | ||
Sbjct 604 ACAAGAGATC--CT-C-T-A--CA-CCTTTAG-CTTCACCTTCTA-A-T--------CC- 643
Query 475 CAACACTTCCAGATCTAAACCCACCAATACTCTTCTCAAACCAAATCCATAATAAATCGA 534
||| ||||||||||||||||||||| || || ||||||| |||||||| |||||| || |
Sbjct 644 CAA-ACTTCCAGATCTAAACCCACCGATTCTTTTCTCAAGCCAAATCCCTAATAAGTC-A 701
Query 535 AAGGGTCATCACAAGATCTCAACTTGTTGTCTTTCCCGGTCATGCAAGATCAACATCAAC 594
|| | | | | |||||||||||| | ||||||||||||||||||||||| |||||
Sbjct 702 AA---T-A--A-A-GATCTCAACTTGCTATCTTTCCCGGTCATGCAAGATCATCATCA-- 751
Query 595 ATCATGTCCATATGTCTCAGTTTCTTCAGATGCCGAAGATGGAG 638
||||| ||||||||| ||| |||| ||||| ||||| |||
Sbjct 752 -TCATGG---TATGTCTCATTTTTTTCATATGCCCAAGATAGAG 791
> AT4G24060.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr4:12503782-12505646 FORWARD LENGTH=1446
Length=1446
Score = 209 bits (113), Expect = 4e-53
Identities = 172/200 (86%), Gaps = 6/200 (3%)
Strand=Plus/Plus
Query 231 GAGAGGAAAGCAAGACCACAAGA-GA--AA-C--TAAATTGTCCAAGATGTAACTCTACC 284
|||||||| ||||| ||| || | || || | |||| ||||| ||||||||||| |||
Sbjct 312 GAGAGGAAGGCAAGGCCAGAAAAGGATCAAGCTGTAAACTGTCCGAGATGTAACTCAACC 371
Query 285 AACACAAAGTTTTGTTACTACAACAACTATAGTCTCACACAACCAAGATACTTCTGCAAA 344
|||||||||||||||||||||||||| |||||| | || || ||||||||||||||||||
Sbjct 372 AACACAAAGTTTTGTTACTACAACAATTATAGTTTGACGCAGCCAAGATACTTCTGCAAA 431
Query 345 GGTTGTCGAAGGTATTGGACCGAAGGTGGATCTCTTAGGAATGTTCCTGTGGGAGGAAGC 404
|||||| ||||||||||||||||||| || || |||||||| ||||||| || || ||
Sbjct 432 GGTTGTAGAAGGTATTGGACCGAAGGCGGTTCGCTTAGGAACATTCCTGTTGGCGGTGGC 491
Query 405 TCAAGAAAGAACAAGAGATC 424
||||||||||||||||||||
Sbjct 492 TCAAGAAAGAACAAGAGATC 511
> AT2G28510.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr2:12199098-12200765 REVERSE LENGTH=1290
Length=1290
Score = 134 bits (72), Expect = 2e-30
Identities = 115/135 (85%), Gaps = 6/135 (4%)
Strand=Plus/Plus
Query 260 AAATTGTCCAAGATGT-AACTCTACC-AACACAAAGTTTTGTTACTACAACAACTATAGT 317
|||||||||||||||| || ||| || |||||||||||||||||||||||||||||||||
Sbjct 282 AAATTGTCCAAGATGTGAA-TCT-CCAAACACAAAGTTTTGTTACTACAACAACTATAGT 339
Query 318 CTCACACAACCAAGATACTTCTGCAAAGGTTGTCGAAGGTATTGGACCGAAGGTGG-ATC 376
||| ||||||| | |||||||||||| |||||| || |||||||| |||| || | |
Sbjct 340 CTCTCACAACCTCGTTACTTCTGCAAATCTTGTCGGAGATATTGGACTAAAGGCGGTA-C 398
Query 377 TCTTAGGAATGTTCC 391
|||| | || |||||
Sbjct 399 TCTTCGTAACGTTCC 413
> AT5G60200.1 | Symbols: TMO6 | TARGET OF MONOPTEROS 6 | chr5:24240975-24242523
FORWARD LENGTH=1449
Length=1449
Score = 110 bits (59), Expect = 4e-23
Identities = 124/156 (79%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 264 TGTCCAAGATGTAACTCTACCAACACAAAGTTTTGTTACTACAACAACTATAGTCTCACA 323
|||||| | || |||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 272 TGTCCACGTTGCGACTCAACAAACACAAAGTTTTGTTACTACAACAACTACAGTCTCACT 331
Query 324 CAACCAAGATACTTCTGCAAAGGTTGTCGAAGGTATTGGACCGAAGGTGGATCTCTTAGG 383
|| || | |||||||||||| || || || |||||||| |||||||| |||| |||
Sbjct 332 CAGCCTCGCTACTTCTGCAAATCATGCCGGAGATATTGGACTAAAGGTGGAACTCTAAGG 391
Query 384 AATGTTCCTGTGGGAGGAAGCT-CAAGAAAGAACAA 418
|| | || ||||| ||| ||| | |||| |||||
Sbjct 392 AACATCCCCGTGGGTGGAGGCTGCCGGAAA-AACAA 426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56576014215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5