BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935645
Length=1198
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46630.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 1681 0.0
> AT2G46630.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING:
13 growth stages; Has 110095 Blast hits to 59224 proteins in
2216 species: Archae - 177; Bacteria - 15429; Metazoa - 38345;
Fungi - 18843; Plants - 13341; Viruses - 3084; Other Eukaryotes
- 20876 (source: NCBI BLink). | chr2:19145529-19146713
FORWARD LENGTH=1185
Length=1185
Score = 1681 bits (910), Expect = 0.0
Identities = 1101/1188 (93%), Gaps = 33/1188 (3%)
Strand=Plus/Plus
Query 21 ATGTCTAACATTCGTCCATGGTTCCGTCTCTCTAGCATCGCTAGACCAACATCACAAGGT 80
|||||||||||||||||||||||||||||||||||||||||||| || ||| | ||||||
Sbjct 1 ATGTCTAACATTCGTCCATGGTTCCGTCTCTCTAGCATCGCTAGGCCTACAGCGCAAGGT 60
Query 81 TCAAGCGACCCTCCTCCACCTCAACCCCGACCAA-CTCCTCGCCGTTCGGTCGTAGTCAG 139
||||||||||| |||||||||||||| ||||||| || ||||| ||||| ||||||||||
Sbjct 61 TCAAGCGACCCACCTCCACCTCAACCTCGACCAACCT-CTCGCAGTTCGCTCGTAGTCAG 119
Query 140 ACCTCCGGCAAAACAACCGTCACCTCCACGTCAGCGACAAGCTCCTTCACCTCCACGTCA 199
||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 120 ACCACCGGCAAAACAACCGTCACCTCCACGTCAGCGACAACCTCGTTCACCTCCACGTCA 179
Query 200 GCAACAACCTCCTTCCCCTCCACGTCAGCAGCAACAGCCTCTTACCCCTCCACGTCAGCA 259
|||| | |||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 180 GCAAGATCCTCCTTCACCTCCACGTCAGCAGCAACAGCCTCTTACCCCTCCACGTCAGAA 239
Query 260 -GCAACAGCCAACTTCACCTCCTCAAGAGCGGTCCCCATATCATTCACCTCCAAGTCGCC 318
|| | ||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 240 GGC-TCCTCCAACTTCACCCCCTCAAGAGCGGTCCCCATATCATTCACCTCCAAGCCGCC 298
Query 319 ACATGTCACCGCCGACCCCACCAAAGGCTGCGACACCACAGCCGCCACCGCCTCGGTCAT 378
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 299 ACATGTCACCACCGACCCCACCAAAGGCTGCGACACCACCTCCGCCACCGCCTCGGTCGT 358
Query 379 CATACACG-CCGCCACCATCTCCCAAGGAAGTTCAAGAAGCCTTACCACCGCGAAAACCA 437
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CATACACGTCC-CCACCATCTCCCAAGGAAGTTCAAGAAGCCTTACCACCGCGAAAACCG 417
Query 438 AACTCACCACCGAGTCCAGCTCATTCAAGTCGGTCTACATCATCTGAGTCAGTGAAAACT 497
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 418 AACTCACCACCGAGTCCAGCTCATTCAAGTCGGTCTACAACATCTGAGTCAGTGAAAACT 477
Query 498 CGATCTGCATCAGAGTCAGAGAATCATCGGAAAGCACCATCACCGAGAGTACTCTCACCT 557
|| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 478 CGGTCTCCATCAGAGTCAGAGAATCATCGGAAAGCACCATCACCGAGAGTACTATCACCT 537
Query 558 TACTCTCTCCCACCTTCTCAGTTACATTCGGAACGCGAAACCACTCAGAAAAACATTCTC 617
|||||||||||| |||||| ||||||||| ||||| ||||||||||||||||||||||||
Sbjct 538 TACTCTCTCCCAGCTTCTCTGTTACATTCCGAACGTGAAACCACTCAGAAAAACATTCTC 597
Query 618 ACTGCCGAGAAAACAAGCCAAACCCACGAACCAAATCATCATAACCAGAACCATAAC--T 675
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
Sbjct 598 ACTGCCGAGAAAACAAGCCAAACCCACGAAACAAATCATCATAACCAGAATCATAACCAT 657
Query 676 -AC-A-A-CCAGAACCATAACTATAACCAAAACCA---C-A-A-CCA------------T 713
|| | | ||||||||||||||||||||||||||| | | | ||| |
Sbjct 658 GACTATAACCAGAACCATAACTATAACCAAAACCATAGCTATAACCAAAACCAAAACCAT 717
Query 714 CAAGGCAACAACCCCAAGAAGATGCATCGTCAGCCATCTACTTCCGATTCTGAGAACATA 773
|||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||
Sbjct 718 CAAGGCAACAACCCCAAGAAGATGCATCGTCAACCATCTTCGTCCGATTCTGAGAACATA 777
Query 774 ATGAGCACACGAGTCATCACCATTGCAGGTGAAAACAAAGGTGCTGTAATGGAGATCCTG 833
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 778 ATGAGCACACGAGTCATCACCATTGCAGGTGAAAACAAAGGTGCAGTAATGGAGATCCTA 837
Query 834 CGATCTCCTCAAGGCAACAAAACAGGAGGTTCAGGAACACATTCCTCTAGGGTTTCACAC 893
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 838 CGATCTCCTCAAGGCAACAAAACCGGTGGTTCAGGAACACATTCCTCTAGGGTTTCACAC 897
Query 894 GGCACCGGAGAGAAAGGACGTCGACTTCAAAGCAGCAGCAGTAGCAGCAGCGACGAAGGA 953
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 898 GGCACCGGAGAGAAAGGACGGAGACTTCAAAGCAGCAGCAGTAGCAGCAGCGACGAAGGA 957
Query 954 GAAGGGAAGAAGAGAACAACGAAGAAC--CCC-AACAATGGCAATAGTAATCTCCCCATG 1010
||||| ||||||| ||| ||||||||| ||| ||||| ||||||||||| ||||| |||
Sbjct 958 GAAGGTAAGAAGAAAACGACGAAGAACGTCCCTAACAAAGGCAATAGTAACCTCCCAATG 1017
Query 1011 AAAGCTTTTATGAACAGTAACGTTCAGATGATAAACAACTCCATTGTTTACAATTCGACG 1070
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1018 AAAGCTTTTATGAATAGTAACGTTCAGATGATAAACAACTCCATTGTCTACAACTCGACG 1077
Query 1071 GCATCTCATCATGATCCCGGCGTTCATCTTAAAATCTCCCGGAAACCTGGCTCCGACAAT 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GCATCTCATCATGATCCCGGCGTTCATCTTAAAATCTCCCGGAAACCTGGCTCCGACAAT 1137
Query 1131 GGTTTTCATGTCAGTGATTACGGTAATAACGGCGGATACACCAACTGA 1178
||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1138 GGTTTTCATGTCAGTGATTACGGTAATAATGGCGGATACACCAACTGA 1185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58835038740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5