BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg935646
Length=799
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46640.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 562 2e-159
> AT2G46640.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 20
plant structures; EXPRESSED DURING: 11 growth stages. | chr2:19148662-19151080
FORWARD LENGTH=1311
Length=1311
Score = 562 bits (304), Expect = 2e-159
Identities = 370/400 (93%), Gaps = 12/400 (3%)
Strand=Plus/Plus
Query 1 TAAG-AGAAATAGAGAAAACTATGACGATCTTTAACTGGGTGCAGAAAAAGCTGCACCAA 59
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 TAAGAAGAAATAGAGAAAACTATGACGATCTTTAACTGGGTGCAGAAAAAGCTGCACCAA 169
Query 60 AATGTCATCAAAGA--T-G--G-TGTGACaaaaaacgagaagaagaagagaaatgaagga 113
|||||||||||||| | | | ||||| |||||||||||||||||||| |||||||||
Sbjct 170 AATGTCATCAAAGAAATAGATGGTGTGAGGAAAAACGAGAAGAAGAAGAGGAATGAAGGA 229
Query 114 ataagtgagattgagaagaacacgaaagCTATATTGGATCAAGTGGGGTTAGTGGATGCC 173
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 230 ATAAGTGAGATTGAGAAGAACACGAAAGCTATATTGGATCAAGTTGGTTTAGTGGATGCT 289
Query 174 CTTGATAATTGGTTCGATGGAGTTCTCACCATCGGCACATTTGG-TTTCGACACCTTGAA 232
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 290 CTTGATAATTGGTTCGATGGAGTTCTCACCATCGGCACATTTGGCTTT-GACACCTTGAA 348
Query 233 CTTTAAAGAAGAAGATGAAAAAGAAGATGATGATGAATGTGAGAGTGTGGATCTCGACTA 292
||| |||||||||||||||| | |||||||||||||| | ||||| ||||||||||||
Sbjct 349 CTTCAAAGAAGAAGATGAAAT-G--GATGATGATGAATGCGGGAGTGGGGATCTCGACTA 405
Query 293 TGTCGTAATTGATGGCAGCATCATCAAGAACGTGGACCAAGAGTTGGATCCTCTTATCTC 352
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 406 CGTCGTAATTGATGGCAGCATCATCAAGAACGTCGACCAAGAGTCGGATCCTCTTATCTC 465
Query 353 CGAAGAAAATAAGTTTTATGATCATCATAAAGATGTTGGG 392
|| |||||||||||||||||||||||| ||||||| |||
Sbjct 466 CGTTGAAAATAAGTTTTATGATCATCATGAAGATGTCGGG 505
Score = 462 bits (250), Expect = 2e-129
Identities = 369/420 (88%), Gaps = 33/420 (8%)
Strand=Plus/Plus
Query 402 GAGATAGAGCCACAGAAGAAGAGGACAACACTTGCGGAGCTTTTCATGGAGGACCACGAG 461
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 GAGATAGAGCCACAGAAGAAGAGGACAACACTTGCGGAGCTTTTCATGGAGGACCAC--- 646
Query 462 GTCCACGACGAAGGCTATGACACGTGGCATGGCAAGCAACCCAAGAACCCTAACCTTGAC 521
| || | |||| ||||||||||||||| ||||| ||||||| |||||||| ||||||
Sbjct 647 G---AC-A--AAGGTTATGACACGTGGCATTGCAAGAAACCCAATAACCCTAATCTTGAC 700
Query 522 GGTGAGGAGGTTAAATATTATAAACAAAACGGTTCAAAACTAAGTAAGAAGTTCTCGTTT 581
|||||||||||||| || |||||||||||||||||||||||||| |||| ||||||||||
Sbjct 701 GGTGAGGAGGTTAAGTACTATAAACAAAACGGTTCAAAACTAAGCAAGAGGTTCTCGTTT 760
Query 582 GTTAAGAAGAAGCTGGTCATGTCAAAGTCCAAAGATGAAGAAAAAGACTTACGTCCAATC 641
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 761 GTTAAGAAGAAGCTGGTCATGTCAAAGTCCAAAGAGGAAGAAAACGACTTACGTCCAATC 820
Query 642 AAGAAAATGCGTCAGATGATTAAGAGGATGTTGAAGAAGAAGATCCATCCAGATAT--A- 698
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
Sbjct 821 AAGAAAATGCGTCAGATGATAAAGAGGATGTTGAAGAAGAAGATCCATCCAGATGTCGAT 880
Query 699 G-A-C---G--TT----------C---C-ATACCAGCCAACTCGGAACTGTGAAGCTCTC 737
| | | | || | | |||| ||||||||||||||||||||||||||
Sbjct 881 GCAACTAAGGCTTTAAAGAAGGACGTTCCATACAAGCCAACTCGGAACTGTGAAGCTCTC 940
Query 738 GAGTCACATTGTCTTCTTAACATTCAAGATTGCGTGGCCTAGAAGTCTTAGGACGACGAC 797
|||||||||| ||||||||| ||||||||||||||||||||||||||| || ||||||||
Sbjct 941 GAGTCACATTATCTTCTTAAAATTCAAGATTGCGTGGCCTAGAAGTCTAAGAACGACGAC 1000
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38881229778
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5